Stem-loop gma-MIR398b

Accession

MI0001788

Description

Glycine max gma-MIR398b precursor miRNA

Literature search

17 open access papers mention gma-MIR398b
(76 sentences)

Sequence

2184813 reads, 2708.0 reads per million, 177 experiments

aguccaaaugguuuaucucagaGGAGUGGAUCUGAGAACACAAggcugguuugcacugcuauauuaugaucgauugguauaaggugaauuuacuUUGUGUUCUCAGGUCACCCCUUugagccaaccuguugacau
.(((.((..((((...((((((((.(((.((((((((((((((((..(((((((.((..(((((((........))))))))))))))))..))))))))))))))))))).))))))))..))))..)))))..

Structure

-a   c  au    uau        A   G                cu       a  gc       uga 
  guc aa  gguu   cucagaGG GUG AUCUGAGAACACAAgg  gguuugc cu  uauauua   u
  ||| ||  ||||   |||||||| ||| ||||||||||||||||  ||||||| ||  |||||||    
  cag uu  ccaa   gaguUUCC CAC UGGACUCUUGUGUUuc  uuaagug ga  auauggu   c
ua   -  gu    -cc        C   -                au       -  --       uag 

Annotation confidence High

Genome context

chr2: 11080996-11081130 [-]

Mature gma-miR398b-5p

• Accession: MIMAT0037314
• Description: Glycine max gma-miR398b-5p mature miRNA
• Sequence: 23 - GGAGUGGAUCUGAGAACACAA - 43
• Evidence: experimental ; Illumina [2]

Mature gma-miR398b-3p

• Accession: MIMAT0001690
• Description: Glycine max gma-miR398b-3p mature miRNA
• Sequence: 95 - UUGUGUUCUCAGGUCACCCCUU - 116
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 25747880
   Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
   "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
   "Plant Cell (2015) 27:546-562