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Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean |
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|---|---|
| PubMed ID | 25747880 |
| Authors | "Zhao M, Meyers BC, Cai C, Xu W, Ma J" |
| Journal | "Plant Cell |
| Volume | 27 |
| Pages | 546-562 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| gma-MIR156e | MI0001771 | None | chr18 | 57144436 | 57144559 | - | - |
| gma-MIR398b | MI0001788 | None | chr2 | 11080996 | 11081130 | - | - |
| gma-MIR319c | MI0001789 | None | chr14 | 45231920 | 45232140 | - | - |
| gma-MIR2109 | MI0010579 | None | chr4 | 36995886 | 36995956 | - | - |
| gma-MIR4348a | MI0016478 | None | chr12 | 37311016 | 37311160 | - | - |
| gma-MIR4349 | MI0016479 | None | chr19 | 44546410 | 44546567 | + | - |
| gma-MIR4414a | MI0016583 | None | chr20 | 36756848 | 36756975 | + | - |
| gma-MIR4416c | MI0019717 | None | chr2 | 27334573 | 27334768 | - | - |
| gma-MIR169s | MI0019763 | None | chr17 | 4594138 | 4594257 | - | - |
| gma-MIR5780b | MI0031003 | None | chr13 | 36156892 | 36157107 | - | - |
| gma-MIR9749 | MI0031038 | None | chr17 | 13919131 | 13919250 | - | - |
| gma-MIR9755 | MI0031048 | None | chr1 | 23400197 | 23400289 | - | - |
| gma-MIR10186a | MI0032951 | None | chr10 | 1434534 | 1434651 | + | - |
| gma-MIR10190 | MI0032955 | None | chr10 | 49006840 | 49007093 | - | - |
| gma-MIR10193a | MI0032960 | None | chr16 | 22348358 | 22348449 | + | - |
| gma-MIR10197 | MI0032964 | None | chr1 | 33086656 | 33086756 | + | - |
| gma-MIR10405a | MI0033431 | None | chr1 | 3329190 | 3329282 | + | - |
| gma-MIR4348d | MI0033432 | None | chr1 | 6848789 | 6849112 | + | - |
| gma-MIR10406a | MI0033433 | None | chr1 | 9681298 | 9681487 | + | - |
| gma-MIR10186b | MI0033434 | None | chr1 | 25275608 | 25275733 | + | - |
| gma-MIR10407a | MI0033435 | None | chr1 | 27712399 | 27712497 | + | - |
| gma-MIR10408 | MI0033436 | None | chr1 | 12590738 | 12590810 | - | - |
| gma-MIR10186c | MI0033437 | None | chr1 | 17491021 | 17491150 | - | - |
| gma-MIR10409 | MI0033438 | None | None | None | - | ||
| gma-MIR10410a | MI0033439 | None | chr1 | 45168658 | 45168732 | - | - |
| gma-MIR10411 | MI0033440 | None | chr2 | 392903 | 393160 | + | - |
| gma-MIR10412 | MI0033441 | None | chr2 | 13640508 | 13640589 | + | - |
| gma-MIR10407c | MI0033442 | None | chr2 | 32116342 | 32116524 | + | - |
| gma-MIR10413a | MI0033443 | None | chr2 | 32091522 | 32091603 | - | - |
| gma-MIR10414 | MI0033444 | None | chr3 | 28825809 | 28825910 | + | - |
| gma-MIR10186d | MI0033445 | None | chr3 | 32481374 | 32481500 | + | - |
| gma-MIR167l | MI0033446 | None | chr3 | 37301792 | 37301901 | + | - |
| gma-MIR10407d | MI0033447 | None | chr3 | 8041380 | 8041482 | - | - |
| gma-MIR10415 | MI0033448 | None | chr3 | 35139836 | 35140003 | - | - |
| gma-MIR10405e | MI0033449 | None | chr4 | 16369687 | 16369759 | + | - |
| gma-MIR10416 | MI0033450 | None | chr4 | 45286970 | 45287091 | + | - |
| gma-MIR10413b | MI0033451 | None | chr4 | 32186203 | 32186273 | - | - |
| gma-MIR10417 | MI0033452 | None | chr4 | 37097209 | 37097297 | - | - |
| gma-MIR10418 | MI0033453 | None | chr4 | 23817190 | 23817280 | + | - |
| gma-MIR4405b | MI0033454 | None | chr4 | 22567095 | 22567243 | + | - |
| gma-MIR10193e | MI0033455 | None | chr4 | 21763665 | 21763743 | + | - |
| gma-MIR399j | MI0033456 | None | chr5 | 35222145 | 35222245 | + | - |
| gma-MIR10419 | MI0033457 | None | chr5 | 40444478 | 40444653 | - | - |
| gma-MIR10420 | MI0033458 | None | chr5 | 40061733 | 40061839 | - | - |
| gma-MIR10421 | MI0033459 | None | chr6 | 29177604 | 29177739 | + | - |
| gma-MIR10186e | MI0033460 | None | chr6 | 14673587 | 14673715 | - | - |
| gma-MIR10422 | MI0033461 | None | chr6 | 27463074 | 27463202 | + | - |
| gma-MIR10423 | MI0033462 | None | chr7 | 6384186 | 6384284 | - | - |
| gma-MIR10424a | MI0033463 | None | chr7 | 14078227 | 14078383 | + | - |
| gma-MIR399k | MI0033464 | None | chr8 | 9106143 | 9106243 | + | - |
| gma-MIR10405b | MI0033465 | None | chr8 | 11407785 | 11407872 | + | - |
| gma-MIR10405c | MI0033466 | None | chr8 | 40949576 | 40949657 | - | - |
| gma-MIR10425 | MI0033467 | None | chr8 | 47654258 | 47654356 | - | - |
| gma-MIR169w | MI0033468 | None | chr9 | 5348169 | 5348283 | + | - |
| gma-MIR10186f | MI0033469 | None | chr9 | 6948717 | 6948842 | + | - |
| gma-MIR399l | MI0033470 | None | chr9 | 36735539 | 36735666 | + | - |
| gma-MIR10410b | MI0033471 | None | chr9 | 21876227 | 21876301 | - | - |
| gma-MIR4374c | MI0033472 | None | chr9 | 35694869 | 35695069 | - | - |
| gma-MIR399m | MI0033473 | None | chr10 | 46849030 | 46849140 | + | - |
| gma-MIR10426 | MI0033474 | None | chr10 | 4400235 | 4400307 | - | - |
| gma-MIR10193b | MI0033475 | None | None | None | - | ||
| gma-MIR10427a | MI0033476 | None | chr10 | 20731632 | 20731768 | + | - |
| gma-MIR10406b | MI0033477 | None | chr10 | 35380775 | 35380964 | - | - |
| gma-MIR10186g | MI0033478 | None | chr10 | 43514642 | 43514769 | + | - |
| gma-MIR9724b | MI0033479 | None | chr10 | 45152450 | 45152602 | - | - |
| gma-MIR4414b | MI0033480 | None | None | None | - | ||
| gma-MIR10424b | MI0033481 | None | chr12 | 5112032 | 5112190 | + | - |
| gma-MIR10428 | MI0033482 | None | chr12 | 9669216 | 9669665 | + | - |
| gma-MIR4997b | MI0033483 | None | chr4 | 24905205 | 24905295 | + | - |
| gma-MIR10429 | MI0033484 | None | chr12 | 13957365 | 13957535 | - | - |
| gma-MIR5377b | MI0033485 | None | chr12 | 14993964 | 14994041 | - | - |
| gma-MIR10427b | MI0033486 | None | chr12 | 27140483 | 27140549 | + | - |
| gma-MIR10430 | MI0033487 | None | chr13 | 17369247 | 17369377 | - | - |
| gma-MIR10186h | MI0033488 | None | chr13 | 15432045 | 15432172 | + | - |
| gma-MIR10431 | MI0033489 | None | chr13 | 28434772 | 28434882 | - | - |
| gma-MIR10432 | MI0033490 | None | chr13 | 36656480 | 36656684 | - | - |
| gma-MIR10186i | MI0033491 | None | chr14 | 1996945 | 1997102 | + | - |
| gma-MIR10433 | MI0033492 | None | chr14 | 34719805 | 34719886 | - | - |
| gma-MIR5764b | MI0033493 | None | chr14 | 36204271 | 36204693 | - | - |
| gma-MIR10434 | MI0033494 | None | chr15 | 12973930 | 12974082 | + | - |
| gma-MIR10435 | MI0033495 | None | chr15 | 27343801 | 27344040 | + | - |
| gma-MIR10405d | MI0033496 | None | chr15 | 49845472 | 49845567 | + | - |
| gma-MIR10410c | MI0033497 | None | chr15 | 16776561 | 16776635 | - | - |
| gma-MIR10407b | MI0033498 | None | chr15 | 31453396 | 31453505 | - | - |
| gma-MIR10436 | MI0033499 | None | chr15 | 31181524 | 31181740 | + | - |
| gma-MIR399n | MI0033500 | None | chr16 | 36109955 | 36110082 | + | - |
| gma-MIR10437 | MI0033501 | None | chr16 | 16521961 | 16522166 | - | - |
| gma-MIR10438 | MI0033502 | None | chr17 | 21204583 | 21204719 | - | - |
| gma-MIR10439 | MI0033503 | None | chr18 | 16724414 | 16724547 | + | - |
| gma-MIR10424c | MI0033504 | None | chr18 | 20565122 | 20565274 | + | - |
| gma-MIR10440 | MI0033505 | None | chr18 | 48514053 | 48514390 | + | - |
| gma-MIR10441 | MI0033506 | None | chr18 | 3041435 | 3041589 | - | - |
| gma-MIR10442 | MI0033507 | None | chr18 | 29660557 | 29660787 | + | - |
| gma-MIR10193c | MI0033508 | None | chr19 | 7566167 | 7566273 | + | - |
| gma-MIR10193d | MI0033509 | None | chr19 | 7654532 | 7654638 | + | - |
| gma-MIR10186j | MI0033510 | None | chr19 | 27923428 | 27923555 | + | - |
| gma-MIR10186k | MI0033511 | None | None | None | - | ||
| gma-MIR10186l | MI0033512 | None | chr19 | 27924141 | 27924268 | + | - |
| gma-MIR10443 | MI0033513 | None | chr19 | 49795077 | 49795182 | + | - |
| gma-MIR10424d | MI0033514 | None | chr19 | 9716958 | 9717107 | - | - |
| gma-MIR10444 | MI0033515 | None | chr19 | 34578330 | 34578452 | - | - |
| gma-MIR10445 | MI0033516 | None | chr20 | 5351525 | 5351604 | - | - |
| gma-MIR10193f | MI0033517 | None | chr20 | 24780549 | 24780651 | - | - |
| gma-MIR10446 | MI0033518 | None | chr20 | 31367694 | 31367797 | - | - |
| gma-MIR10447 | MI0033519 | None | chr20 | 33668881 | 33669186 | - | - |
| gma-MIR399o | MI0033520 | None | chr20 | 39357304 | 39357414 | - | - |
| gma-MIR10448 | MI0033521 | None | chr10 | 10356246 | 10356377 | + | - |