Stem-loop gma-MIR10428

Accession

MI0033482

Description

Glycine max gma-MIR10428 precursor miRNA

Sequence

8347 reads, 57.0 reads per million, 178 experiments

ccaacaugagacuuuuaacauguuuugucuucacucacacguuuucugaaaacacuucccagaaggcuacucaucccauaauugcuucaaggcaaacacacuuaacuuuggaguucuuaagugacggacuaccaaaaaggagaugcaucuuguuaguauagguaauaucaauuaauuuuuuuAAGUCAUCCUCAAUUGUACAGUuucauacuuguauagagggauccaaagauuguacaaguaugauauuguacaauugaagaugacuuaaaggaauuaauuaguauuaucuauacaacaaaaugcauauacuuuuugguagccuauuacuuaagaacuccacaauuaagcaugcuuaucuuggagcaauuaagggaugagugaccuugucggaaguuuccaagaaagcgugugaaUGAGGACAAAACACGUUGAAAAGUcucguguuag
..(((((((((((((((((.(((((((((((((.(((((((((((((......((((((.(.((((.((((((((((.((((((((((((((.((.((..(((((...((((((((((((((((.((.(((((((((((...((((((.(((((.(((((((((((((.(((((((((((((((((((((.(((((((((((((.((((((((((((.....((((....)))))))))))))))).))))))))))))).))))))))))))))))))))).)))))))))))))))))).))))))...)))))))))))))..))))))))))))))))...)))))..)).)).)))))))))))))).)))))))))).)))).).)))))).....))))))))))))).))))))))))))).)))).)))))))))))))..

Structure

cc             -    a             c             gaaaac      c g    c          a              c  a  ca     cuu                -c  a           gag      c     a             c                     C             u            agagg    c 
  aacaugagacuuu uaac uguuuugucuuca ucacacguuuucu      acuucc a aagg uacucauccc uaauugcuucaagg aa ca  cuuaa   uggaguucuuaaguga  gg cuaccaaaaag   augcau uuguu guauagguaauau aauuaauuuuuuuAAGUCAUC UCAAUUGUACAGU ucauacuuguau     gauc a
  ||||||||||||| |||| ||||||||||||| |||||||||||||      |||||| | |||| |||||||||| |||||||||||||| || ||  |||||   ||||||||||||||||  || |||||||||||   |||||| ||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||     ||||  
  uugugcucUGAAA GUUG ACAAAACAGGAGU agugugcgaaaga      ugaagg u uucc gugaguaggg auuaacgagguucu uu gu  gaauu   accucaagaauucauu  cc gaugguuuuuc   uacgua aacaa cauaucuauuaug uuaauuaaggaaauucaguag aguuaacauguua aguaugaacaug     uuag a
ga             A    C             a             -accuu      c g    a          a              a  c  ac     aac                au  -           aua      a     -             a                     a             u            -----    a 

Annotation confidence Low

Genome context

chr12: 9669216-9669665 [+]

Mature gma-miR10428-5p

• Accession: MIMAT0054531
• Description: Glycine max gma-miR10428-5p mature miRNA
• Sequence: 183 - AAGUCAUCCUCAAUUGUACAGU - 204
• Evidence: experimental ; unknown

Mature gma-miR10428-3p

• Accession: MIMAT0041690
• Description: Glycine max gma-miR10428-3p mature miRNA
• Sequence: 417 - UGAGGACAAAACACGUUGAAAAGU - 440
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25747880
   Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
   "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
   "Plant Cell (2015) 27:546-562