Stem-loop gma-MIR10407c

Accession

MI0033442

Description

Glycine max gma-MIR10407c precursor miRNA

Sequence

18171 reads, 91.0 reads per million, 178 experiments

agugaaaagacgaaaaaccaaaaaaaaauauuauaugacaaauaugucccuauguuggcaAUUAAAGAUGAUCACGUUGguaaucauuucaaugacaaauucgucccucuauguaauguaagcuauuuauuaaugauuacaaaugaaagUUAACAGUCGGAUAUAUUUAUCGCacuuuuuaca
.((((((((..........................(((.((((((((((...(((((((......(((((((.((....)).)))))))....(((......)))...........(((((..((((....)))).))))).......)))))))...)))))))))).)))..)))))))).

Structure

a        acgaaaaaccaaaaaaaaauauuaua   c          cua       -----------------------------------------------------aAUUAA       C  G 
 gugaaaag                          uga aaauaugucc   uguuggc                                                           AGAUGAU AC U
 ||||||||                          ||| ||||||||||   |||||||                                                           ||||||| ||  
 cauuuuuc                          GCU UUUAUAUAGG   ACAAUUg                                                           uuuacua ug U
a        ------------------------aC   A          CUG       aaaguaaacauuaguaauuauuuaucgaauguaauguaucucccugcuuaaacaguaac       a  G 

Annotation confidence Low

Genome context

chr2: 32116342-32116524 [+]

Mature gma-miR10407c-5p

• Accession: MIMAT0054496
• Description: Glycine max gma-miR10407c-5p mature miRNA
• Sequence: 61 - AUUAAAGAUGAUCACGUUG - 79
• Evidence: experimental ; unknown

Mature gma-miR10407c-3p

• Accession: MIMAT0041650
• Description: Glycine max gma-miR10407c-3p mature miRNA
• Sequence: 150 - UUAACAGUCGGAUAUAUUUAUCGC - 173
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25747880
   Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
   "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
   "Plant Cell (2015) 27:546-562