Stem-loop gma-MIR10186j

Accession

MI0033510

Description

Glycine max gma-MIR10186j precursor miRNA

Sequence

18111 reads, 38.0 reads per million, 173 experiments

uuuagucaccgaAGUUUAUAUUUUAAUUCUCaaacuaucucuacuguuaaauuuuuuuaacuaacggaguuaaaaaaauuuaacggcagagacuUUUUGGGAAUUAAAAUGUAAACUUaagggauuaa
.((((((.((.(((((((((((((((((((((((...(((((.(((((((((((((((((((.....))))))))))))))))))).)))))...)))))))))))))))))))))))..))))))))

Structure

u      a  -g                       cua     a                   a 
 uuaguc cc  aAGUUUAUAUUUUAAUUCUCaaa   ucucu cuguuaaauuuuuuuaacu a
 |||||| ||  |||||||||||||||||||||||   ||||| ||||||||||||||||||| c
 aauuag gg  UUCAAAUGUAAAAUUAAGGGUUU   agaga ggcaauuuaaaaaaauuga g
-      -  aa                       Uuc     c                   g 

Annotation confidence Low

Genome context

chr19: 27923428-27923555 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR10186j

Mature gma-miR10186j-5p

• Accession: MIMAT0054557
• Description: Glycine max gma-miR10186j-5p mature miRNA
• Sequence: 13 - AGUUUAUAUUUUAAUUCUC - 31
• Evidence: experimental ; unknown

Mature gma-miR10186j-3p

• Accession: MIMAT0041718
• Description: Glycine max gma-miR10186j-3p mature miRNA
• Sequence: 95 - UUUUGGGAAUUAAAAUGUAAACUU - 118
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25747880
   Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
   "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
   "Plant Cell (2015) 27:546-562