Stem-loop gma-MIR10440

Accession

MI0033505

Description

Glycine max gma-MIR10440 precursor miRNA

Sequence

augauuggaagguuuauguuauauaucugaaguauugucccaaugaucauuaaaguauaauggucaaauugugcucuuugguuaacaaagucuuucuuguguaagaauuuaauguuacaaggaguuguuagauaaccuuaacaaguuauuuaacacuaaacuuugacagagaaaagauuauguucaccaaagaaacaagcuugugauguuucugaucuugaacauugucuuuacccuuugaugaucauugguguuucugaucuugaacauugucuuuacccuuugaugaucaUUGGGACAAUACUUUAGAUAUauaacaaaaaucuucuaacaaucau
(((((((((((((((.(((((((((((((((((((((((((((((((((((((((((((((......)))))))((((((((.((((.(((((((.((.(((.(((.((((.(((((....((.(((((((......))))))).))...))))).)))).))).))).)).))))))).)))).)))))))).(((....)))(((((((..((((..((((((((((.(((.....))).)))....)))))))..))))..)))))))..........)))))))))))))))))))))))))))))))))))))).))))))))...)))))))

Structure

       ---        a                                      --------------------------------------------------------------------guauaauggucaaauugugc        u    a       c  g   a   a    a     caag  g       au 
augauug   gaagguuu uguuauauaucugaaguauugucccaaugaucauuaaa                                                                                        ucuuuggu aaca agucuuu uu ugu aga uuua uguua    ga uuguuag  a
|||||||   |||||||| ||||||||||||||||||||||||||||||||||||||                                                                                        |||||||| |||| ||||||| || ||| ||| |||| |||||    || |||||||   
uacuaac   cuucuaaa acaauaUAUAGAUUUCAUAACAGGGUUacuaguaguuu                                                                                        agaaacca uugu uuagaaa ga aca uuu aaau acaau    uu aacaauu  a
       aau        a                                      cccauuucuguuacaaguucuagucuuugugguuacuaguaguuucccauuucuguuacaaguucuagucuuuguaguguucgaacaa        c    a       a  g   g   c    c     -uua  g       cc 

Annotation confidence Not enough data

Genome context

chr18: 48514053-48514390 [+]

Mature gma-miR10440

• Accession: MIMAT0041713
• Description: Glycine max gma-miR10440 mature miRNA
• Sequence: 293 - UUGGGACAAUACUUUAGAUAU - 313
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25747880
   Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
   "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
   "Plant Cell (2015) 27:546-562