Stem-loop gma-MIR10434

Accession

MI0033494

Description

Glycine max gma-MIR10434 precursor miRNA

Sequence

10801 reads, 34.0 reads per million, 176 experiments

cggcgucguccagGUAUUAGAUGCAUACUCAGUGGAUuuaauuacuuaguuuguuuuucuguuaucacauuauuacuauaagugugaauucagcauuuaauuaauugauuaauuaaguCUACUGAUUAUAUAUCUGAUACCAGgaguuugaag
...((...(((.(((((((((((.(((.((((((((((((((((.((((((.(((...(((...(((((((.........)))))))...))).....))).)))))).)))))))))))))))).))).))))))))))).)))...))...

Structure

cgg  ucg   a           C   C                c      u   --uuu   uua       auu 
   cg   ucc gGUAUUAGAUG AUA UCAGUGGAUuuaauua uuaguu guu     cug   ucacauu   a
   ||   ||| ||||||||||| ||| |||||||||||||||| |||||| |||     |||   |||||||   c
   gu   agG CCAUAGUCUAU UAU AGUCAUCugaauuaau aguuaa uaa     gac   aguguga   u
gaa  uug   A           A   U                u      u   uuuac   uua       aua 

Annotation confidence High

Genome context

chr15: 12973930-12974082 [+]

Mature gma-miR10434-5p

• Accession: MIMAT0054543
• Description: Glycine max gma-miR10434-5p mature miRNA
• Sequence: 14 - GUAUUAGAUGCAUACUCAGUGGAU - 37
• Evidence: experimental ; unknown

Mature gma-miR10434-3p

• Accession: MIMAT0041702
• Description: Glycine max gma-miR10434-3p mature miRNA
• Sequence: 119 - CUACUGAUUAUAUAUCUGAUACCAG - 143
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25747880
   Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
   "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
   "Plant Cell (2015) 27:546-562