Stem-loop gma-MIR156e

Accession

MI0001771

Description

Glycine max gma-MIR156e precursor miRNA

Literature search

39 open access papers mention gma-MIR156e
(155 sentences)

Sequence

152139 reads, 661.0 reads per million, 178 experiments

aggagguguuggugaugcugCUGACAGAAGAUAGAGAGCACugaugaugaaaugcaugaaagggaauggcaucucacuccuuuguGCUCUCUAGUCUUCUGUCAUCAUCcuucucccuccccuc
.(((((....((.((((....((((((((((((((((((((.((.(((((.((((((........)).)))).))).)).)).))))))))).))))))))))).))))))....)))))....

Structure

---a     uguu  u    cugC           -         u  u  -   a    -  gaa 
    ggagg    gg gaug    UGACAGAAGAU AGAGAGCAC ga ga uga augc au   a
    |||||    || ||||    ||||||||||| ||||||||| || || ||| |||| ||    
    ccucc    uc CUAC    ACUGUCUUCUG UCUCUCGug uu cu acu uacg ua   g
cucc     cucu  -    ---U           A         u  c  c   c    g  agg 

Annotation confidence High

Genome context

chr18: 57144436-57144559 [-]

Mature gma-miR156e-5p

• Accession: MIMAT0001673
• Description: Glycine max gma-miR156e-5p mature miRNA
• Sequence: 21 - CUGACAGAAGAUAGAGAGCAC - 41
• Evidence: experimental ; Illumina [2]

Mature gma-miR156e-3p

• Accession: MIMAT0054003
• Description: Glycine max gma-miR156e-3p mature miRNA
• Sequence: 86 - GCUCUCUAGUCUUCUGUCAUCAUC - 109
• Evidence: experimental ; unknown

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 25747880
   Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
   "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
   "Plant Cell (2015) 27:546-562