Stem-loop gma-MIR10439

Accession

MI0033503

Description

Glycine max gma-MIR10439 precursor miRNA

Sequence

5992 reads, 33.0 reads per million, 175 experiments

cuuaaacuggCAGACAGAUAAUGCUAGAGCCcauaaucauuucuugaagaagauagaugaaaagauugacaagaucuauacccAAGUAAGCACAAAUGAUGaaagguuacaauaucugucugaaaggaugaaga
.(((..((..((((((((((.((....((((....(((((((((((......((((((...............)))))).......))))...)))))))....)))).)).))))))))))..))..)))...

Structure

--c   aa  gg          A  CUAG    caua       ---    -aagaag      gaaaag 
   uua  cu  CAGACAGAUA UG    AGCC    aucauuu   cuug       auagau      a
   |||  ||  |||||||||| ||    ||||    |||||||   ||||       ||||||      u
   agu  ga  gucugucuau ac    uugg    UAGUAAA   GAAU       uaucua      u
aga   ag  aa          a  ---a    aaaG       CAC    GAAccca      gaacag 

Annotation confidence Low

Genome context

chr18: 16724414-16724547 [+]

Mature gma-miR10439-5p

• Accession: MIMAT0041711
• Description: Glycine max gma-miR10439-5p mature miRNA
• Sequence: 11 - CAGACAGAUAAUGCUAGAGCC - 31
• Evidence: experimental ; Illumina [1]

Mature gma-miR10439-3p

• Accession: MIMAT0054551
• Description: Glycine max gma-miR10439-3p mature miRNA
• Sequence: 84 - AAGUAAGCACAAAUGAUG - 101
• Evidence: experimental ; unknown

References

1. PubMed ID: 25747880
   Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
   "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
   "Plant Cell (2015) 27:546-562