Stem-loop gma-MIR5780b

Accession

MI0031003

Description

Glycine max gma-MIR5780b precursor miRNA

Sequence

10381 reads, 56.0 reads per million, 178 experiments

uuuuuguuuugaauuuucguuguUCUGAGUCCAUGAUAUAUUAAAaguuuuguuccuugucccugcagucaauuaagugauaacgugguaccauccuaacauauauugaaagagccguugagauaaugucacaucaucacuuaacucacaacaggaacuugaaacaaaacuuuuaaUAUAUCAGGGAUUCAAAACAACgaaaaaauuuaucaagga
((((((.......(((((((((((.(((((((.(((((((((((((((((((((.(..((.((((..((...(((((((((...((((((..(((.((((................)))).)))..))))))...)))))))))...))..)))).))..).))))))))))))))))))))).))))))).))))))))))).......))))))

Structure

      uuuugaa           C       A                     c uu  c    ca  caa         aac      cc   c    auauauu 
uuuuug       uuuucguuguU UGAGUCC UGAUAUAUUAAAaguuuuguu c  gu ccug  gu   uuaagugau   guggua  auc uaac       g
||||||       ||||||||||| ||||||| ||||||||||||||||||||| |  || ||||  ||   |||||||||   ||||||  ||| ||||        
aggaac       aaaagCAACAA ACUUAGG ACUAUAUaauuuucaaaacaa g  ca ggac  ca   aauucacua   cacugu  uag guug       a
      uauuuaa           A       G                     a uu  a    aa  cuc         cua      aa   a    ccgagaa 

Annotation confidence Medium

Genome context

chr13: 36156892-36157107 [-]

Mature gma-miR5780b-5p

• Accession: MIMAT0036341
• Description: Glycine max gma-miR5780b-5p mature miRNA
• Sequence: 24 - UCUGAGUCCAUGAUAUAUUAAA - 45
• Evidence: experimental ; Illumina [1-2]

Mature gma-miR5780b-3p

• Accession: MIMAT0054412
• Description: Glycine max gma-miR5780b-3p mature miRNA
• Sequence: 177 - UAUAUCAGGGAUUCAAAACAAC - 198
• Evidence: experimental ; unknown

References

1. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153


2. PubMed ID: 25747880
   Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
   "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
   "Plant Cell (2015) 27:546-562