Stem-loop gma-MIR10424a

Accession

MI0033463

Description

Glycine max gma-MIR10424a precursor miRNA

Sequence

1655 reads, 39.0 reads per million, 160 experiments

cauUUUUUUUAGUCCUUGAUAAAguagagaauuuuauguuuacuuccuaauaauuuuuucauuuguuauagacuuuugaaaaagauaauaaaaaaugacaaaaaauuaucagggagcaaacaaaaaUUUUCUAAUUUAUUAGGGACUaaaacaagua
.((((.(((((((((((((((((.(((((((((((.(((((.((((((.(((((((((((((((.((((...((((....))))...)))).))))))..))))))))).)))))).)))))))))))))))).))))))))))))))))).)))).

Structure

c    U                 g           a     a      a         --      g    aga    u 
 auUU UUUUAGUCCUUGAUAAA uagagaauuuu uguuu cuuccu auaauuuuu  ucauuu uuau   cuuu g
 |||| ||||||||||||||||| ||||||||||| ||||| |||||| |||||||||  |||||| ||||   ||||  
 ugaa aaaaUCAGGGAUUAUUU AUCUUUUaaaa acaaa gaggga uauuaaaaa  aguaaa aaua   gaaa a
a    c                 A           -     c      c         ac      a    aua    a 

Annotation confidence Low

Genome context

chr7: 14078227-14078383 [+]

Mature gma-miR10424a-5p

• Accession: MIMAT0054513
• Description: Glycine max gma-miR10424a-5p mature miRNA
• Sequence: 4 - UUUUUUUAGUCCUUGAUAAA - 23
• Evidence: experimental ; unknown

Mature gma-miR10424a-3p

• Accession: MIMAT0041671
• Description: Glycine max gma-miR10424a-3p mature miRNA
• Sequence: 127 - UUUUCUAAUUUAUUAGGGACU - 147
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25747880
   Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
   "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
   "Plant Cell (2015) 27:546-562