Stem-loop gma-MIR319c

Accession

MI0001789

Description

Glycine max gma-MIR319c precursor miRNA

Literature search

21 open access papers mention gma-MIR319c
(53 sentences)

Sequence

31930658 reads, 99130.0 reads per million, 178 experiments

uugggagggaaagagagugaAGGAGCUUCCCUCAGCCCAUUCauggagauaacgaaagauuggguugcugaauuaacugcuagcucacacauucauucauacaauaguauucaauuaggguaauauugugugaaugaagcgggaguauauaguaucuauauuggaacccucuuucucugugcUUGGACUGAAGGGAGCUCCUucuuuuucugcucccucca
...(((((((.((((((.((((((((((((.((((.(((..((((((((......((((..(((((.((((..((..(((((((((.(...(((((((((((((((.(((((.....))))).)))))))))))))))...)))))...)))))..))..)))))))))))))))))))))..))).)))).)))))))))))).))))))..))))))).

Structure

uug       -a      u            C    C   UU        uaacga    uu     g    au  ac     ---    a aca               g     a 
   ggaggga  agagag gaAGGAGCUUCC UCAG CCA  Cauggaga      aaga  ggguu cuga  ua  ugcua   gcuc c   uucauucauacaaua uauuc a
   |||||||  |||||| |||||||||||| |||| |||  ||||||||      ||||  ||||| ||||  ||  |||||   |||| |   ||||||||||||||| ||||| u
   ccucccu  ucuuuu cuUCCUCGAGGG AGUC GGU  gugucucu      uucu  cccaa gguu  au  augau   ugag g   aaguaaguguguuau auggg u
--a       cg      u            A    A   Uc        ------    --     -    au  cu     aua    - gcg               a     a 

Annotation confidence High

Genome context

chr14: 45231920-45232140 [-]

Mature gma-miR319c-5p

• Accession: MIMAT0054013
• Description: Glycine max gma-miR319c-5p mature miRNA
• Sequence: 21 - AGGAGCUUCCCUCAGCCCAUUC - 42
• Evidence: experimental ; unknown

Mature gma-miR319c-3p

• Accession: MIMAT0001691
• Description: Glycine max gma-miR319c-3p mature miRNA
• Sequence: 183 - UUGGACUGAAGGGAGCUCCU - 202
• Evidence: experimental ; 454 [1], Illumina [3-4]

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160


3. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307


4. PubMed ID: 25747880
   Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
   "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
   "Plant Cell (2015) 27:546-562