Stem-loop gma-MIR399k

Accession

MI0033464

Description

Glycine max gma-MIR399k precursor miRNA

Literature search

15 open access papers mention gma-MIR399k
(89 sentences)

Sequence

7147 reads, 91.0 reads per million, 156 experiments

uugaggaaugauaGAGCAAAUCUCCAUUGGCAGUgggaaguagagggcuugaacaugcaugcuucugguuUGCCAAAGGAGAUUUGCCCUGccauuuuuua
.(((((((((.(((.((((((((((.(((((((..(((((((....((........)).)))))))...))))))).)))))))))).))).)))))))))

Structure

u         a   A          A       -Ug       gagg  uug 
 ugaggaaug uaG GCAAAUCUCC UUGGCAG   ggaagua    gc   a
 ||||||||| ||| |||||||||| |||||||   |||||||    ||    
 auuuuuuac GUC CGUUUAGAGG AACCGUu   ucuucgu    cg   a
-         c   C          A       ugg       ---a  uac 

Annotation confidence High

Genome context

chr8: 9106143-9106243 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR399k

Mature gma-miR399k-5p

• Accession: MIMAT0054514
• Description: Glycine max gma-miR399k-5p mature miRNA
• Sequence: 14 - GAGCAAAUCUCCAUUGGCAGU - 34
• Evidence: experimental ; unknown

Mature gma-miR399k-3p

• Accession: MIMAT0041672
• Description: Glycine max gma-miR399k-3p mature miRNA
• Sequence: 71 - UGCCAAAGGAGAUUUGCCCUG - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25747880
   Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
   "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
   "Plant Cell (2015) 27:546-562