Stem-loop gma-MIR10421

Accession

MI0033459

Description

Glycine max gma-MIR10421 precursor miRNA

Sequence

204861 reads, 313.0 reads per million, 177 experiments

ugccucaguuugugugccgccUCUCCGGUUUCAGUUCUUCGCguuucucugcaccugucgggacccguuuucaaagguaggcaauauauauauaucaaaacgcuCAGAAUGAGACCUUGAGCGUGGuucagagguu
.(((((......((.((((((((...(((((((.((((..((((((...(((((((..(((...))).......))))..)))..............))))))..)))))))))))..))).))))).))))))).

Structure

u     aguuug  u     -   UCC       G    UC      -----------cuc   --    -----gu   g 
 gccuc      ug gccgc cUC   GGUUUCA UUCU  GCguuu              ugc  accu       cgg  
 |||||      || ||||| |||   ||||||| ||||  ||||||              |||  ||||       ||| a
 uggag      ac uGGUG GAG   CCAGAGU AAGA  cgcaaa              acg  ugga       gcc  
u     ------  u     C   -UU       -    Cu      acuauauauauaua   ga    aacuuuu   c 

Annotation confidence Medium

Genome context

chr6: 29177604-29177739 [+]

Mature gma-miR10421-5p

• Accession: MIMAT0054509
• Description: Glycine max gma-miR10421-5p mature miRNA
• Sequence: 22 - UCUCCGGUUUCAGUUCUUCGC - 42
• Evidence: experimental ; unknown

Mature gma-miR10421-3p

• Accession: MIMAT0041667
• Description: Glycine max gma-miR10421-3p mature miRNA
• Sequence: 105 - CAGAAUGAGACCUUGAGCGUGG - 126
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25747880
   Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
   "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
   "Plant Cell (2015) 27:546-562