Stem-loop gma-MIR10419

Accession

MI0033457

Description

Glycine max gma-MIR10419 precursor miRNA

Sequence

535 reads, 17.0 reads per million, 122 experiments

agacuuagauacaguuccUUAUGUGUUUUUUGUGCUGUUCUCcaguucaaguuucaccucgucauaccauugcauugaucuuuaaugcaaacccuuauuauauagauuauggaggugaacuccaauucugaucggagaacaauacCAAAAAACACAUAUGAAACUGcaucuaaguu
.(((((((((.(((((.(.(((((((((((((((.((((((((.(.(((((((.((((((.........(((((((((...)))))))))........((((.....)))))))))))))).......))).))))))))).)).))))))))))))).).))))).)))))))))

Structure

a         a     c U             -  C        a u   -------    u      ------------gucauacca         u 
 gacuuagau caguu c UAUGUGUUUUUUG UG UGUUCUCc g uca       aguu caccuc                     uugcauuga  
 ||||||||| ||||| | ||||||||||||| || |||||||| | |||       |||| ||||||                     ||||||||| c
 uugaaucua GUCAA G AUACACAAAAAAC au acaagagg c agu       ucaa guggag                     aacguaauu  
-         c     A U             c  a        - u   cuuaacc    -      guauuagauauauuauuccca         u 

Annotation confidence Medium

Genome context

chr5: 40444478-40444653 [-]

Mature gma-miR10419-5p

• Accession: MIMAT0054508
• Description: Glycine max gma-miR10419-5p mature miRNA
• Sequence: 19 - UUAUGUGUUUUUUGUGCUGUUCUC - 42
• Evidence: experimental ; unknown

Mature gma-miR10419-3p

• Accession: MIMAT0041665
• Description: Glycine max gma-miR10419-3p mature miRNA
• Sequence: 146 - CAAAAAACACAUAUGAAACUG - 166
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25747880
   Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
   "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
   "Plant Cell (2015) 27:546-562