Stem-loop gma-MIR4416c

Accession

MI0019717

Description

Glycine max gma-MIR4416c precursor miRNA

Literature search

3 open access papers mention gma-MIR4416c
(5 sentences)

Sequence

ucauuuuucuguggucacuucugcuCUGGGUGAGAGAAACACGUAUugaagaagguucauggcuuagacaauaaguugcuacuuugcugaacucaccauuuuaugugaagaaguggcuaugcuaauuguuugauucuguacacguacgauACGGGUCGCUCUCACCUGGAGuagggcugcccaaagcuuugauaaa
(((.....((.(((.((.((((((((((((((((((..((.(((((((......((.((.((.(((((((((.(((.((((((((.......((((........)))).))))))))...))).))))))))).)))).)).....))))))).))..)))))))))))))))))).)).))).))...)))....

Structure

----   uuuuu  g   u  c                  AA  A       aagaag  u  u  c         a   --u        gcugaac    cau 
    uca     cu ugg ca uucugcuCUGGGUGAGAG  AC CGUAUug      gu ca gg uuagacaau agu   gcuacuuu       ucac   u
    |||     || ||| || ||||||||||||||||||  || |||||||      || || || ||||||||| |||   ||||||||       ||||    
    agu     ga acc gu gggauGAGGUCCACUCUC  UG GCAuagc      ca gu cu aguuuguua ucg   cggugaag       agug   u
aaau   --uuc  a   c  c                  GC  G       -augca  u  -  u         a   uau        ------a    uau 

Annotation confidence Not enough data

Genome context

chr2: 27334573-27334768 [-]

Mature gma-miR4416c-5p

• Accession: MIMAT0023172
• Description: Glycine max gma-miR4416c-5p mature miRNA
• Sequence: 26 - CUGGGUGAGAGAAACACGUAU - 46
• Evidence: experimental ; Illumina [1]

Mature gma-miR4416c-3p

• Accession: MIMAT0037453
• Description: Glycine max gma-miR4416c-3p mature miRNA
• Sequence: 151 - ACGGGUCGCUCUCACCUGGAG - 171
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553


2. PubMed ID: 25747880
   Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
   "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
   "Plant Cell (2015) 27:546-562