Stem-loop gma-MIR399j

Accession

MI0033456

Description

Glycine max gma-MIR399j precursor miRNA

Literature search

14 open access papers mention gma-MIR399j
(87 sentences)

Sequence

7135 reads, 92.0 reads per million, 155 experiments

uugaggaaugauaGAGCAAAUCUCCAGUGGCAGAgagaaguagagggcuugaacaugcaugcuucugguuUGCCAAAGGAGAUUUGCCCUGccauuuuuua
.(((((((((.(((.((((((((((..(((((((.(((((((....((........)).)))))))..)))))))..)))))))))).))).)))))))))

Structure

u         a   A          AG       -g       gagg  uug 
 ugaggaaug uaG GCAAAUCUCC  UGGCAGA  agaagua    gc   a
 ||||||||| ||| ||||||||||  |||||||  |||||||    ||    
 auuuuuuac GUC CGUUUAGAGG  ACCGUuu  ucuucgu    cg   a
-         c   C          AA       gg       ---a  uac 

Annotation confidence High

Genome context

chr5: 35222145-35222245 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR399j

Mature gma-miR399j-5p

• Accession: MIMAT0054507
• Description: Glycine max gma-miR399j-5p mature miRNA
• Sequence: 14 - GAGCAAAUCUCCAGUGGCAGA - 34
• Evidence: experimental ; unknown

Mature gma-miR399j-3p

• Accession: MIMAT0041664
• Description: Glycine max gma-miR399j-3p mature miRNA
• Sequence: 71 - UGCCAAAGGAGAUUUGCCCUG - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25747880
   Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
   "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
   "Plant Cell (2015) 27:546-562