Stem-loop gma-MIR399m

Accession

MI0033473

Description

Glycine max gma-MIR399m precursor miRNA

Literature search

14 open access papers mention gma-MIR399m
(87 sentences)

Sequence

1461 reads, 15.0 reads per million, 116 experiments

aucagcaauaGGGCUCCUCUCUCCUGGCAUGuaaacugucauuauuuugguaguuuccuaccaaaaguuaguauuagcaacaUGCCAAGGGAGAGUUGCCCUUuggcugcu
..((((...(((((..(((((((.((((((((...(((..(((((((((((((....)))))))))..))))..)))..)))))))).)))))))..)))))...))))..

Structure

au    aau     UC       C        aaa   uc    --         u 
  cagc   aGGGC  CUCUCUC UGGCAUGu   cug  auua  uuuugguag u
  ||||   |||||  ||||||| ||||||||   |||  ||||  |||||||||  
  gucg   UCCCG  GAGAGGG ACCGUaca   gau  ugau  aaaaccauc u
uc    guU     UU       A        -ac   ua    ug         c 

Annotation confidence High

Genome context

chr10: 46849030-46849140 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR399m

Mature gma-miR399m-5p

• Accession: MIMAT0041681
• Description: Glycine max gma-miR399m-5p mature miRNA
• Sequence: 11 - GGGCUCCUCUCUCCUGGCAUG - 31
• Evidence: experimental ; Illumina [1]

Mature gma-miR399m-3p

• Accession: MIMAT0054523
• Description: Glycine max gma-miR399m-3p mature miRNA
• Sequence: 83 - UGCCAAGGGAGAGUUGCCCUU - 103
• Evidence: experimental ; unknown

References

1. PubMed ID: 25747880
   Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
   "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
   "Plant Cell (2015) 27:546-562