Stem-loop gma-MIR169w

Accession

MI0033468

Description

Glycine max gma-MIR169w precursor miRNA

Literature search

23 open access papers mention gma-MIR169w
(95 sentences)

Sequence

142860 reads, 957.0 reads per million, 175 experiments

ggaaugAAGCCAAGGAUGACUUGCCGGCauuaauuugcuaugaagcuagagaguauagcuauuagcuagcuucauuugcugaguuuuccGGCAGGUUAUCCUGUGGCUACAuuug
.(((((.((((((((((((((((((((....(((((((.((((((((((..((((....))))..))))))))))..)).)))))..))))))))))))))).))))).))))).

Structure

g     A     -               Cauu     -  -u          ag    u 
 gaaug AGCCA AGGAUGACUUGCCGG    aauuu gc  augaagcuag  agua a
 ||||| ||||| |||||||||||||||    ||||| ||  ||||||||||  ||||  
 uuuAC UCGGU UCCUAUUGGACGGcc    uugag cg  uacuucgauc  uuau g
g     A     G               --uu     u  uu          ga    c 

Annotation confidence High

Genome context

chr9: 5348169-5348283 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR169w

Mature gma-miR169w-5p

• Accession: MIMAT0041676
• Description: Glycine max gma-miR169w-5p mature miRNA
• Sequence: 7 - AAGCCAAGGAUGACUUGCCGGC - 28
• Evidence: experimental ; Illumina [1]

Mature gma-miR169w-3p

• Accession: MIMAT0054518
• Description: Glycine max gma-miR169w-3p mature miRNA
• Sequence: 90 - GGCAGGUUAUCCUGUGGCUACA - 111
• Evidence: experimental ; unknown

References

1. PubMed ID: 25747880
   Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
   "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
   "Plant Cell (2015) 27:546-562