miRBase entry: gma-MIR10427a

Stem-loop gma-MIR10427a


Accession
MI0033476
Description
Glycine max gma-MIR10427a precursor miRNA


Sequence

260194 reads, 396.0 reads per million, 178 experiments
aagaggcuccAAGAGAAUUGGGCUAGAGCUGCugaagaaggcccuaggauucucaugaaccucaggauagauuucugagcccauugaccaaguuuggguccaauucucUUUGUACAUAUUAGACUAGGAUGucauua
....((((((((((((((((((((.((((((((..(((((..((((((.(((....)))))).))).....))))).)))..........))))).))))))))))))))................))).)))....

Structure
aaga   -   ----------------              A     ----------   ga     ---gc   -   a   u 
    ggc ucc                AAGAGAAUUGGGCU GAGCU          GCu  agaag     ccu agg uuc c
    ||| |||                |||||||||||||| |||||          |||  |||||     ||| ||| |||  
    cuG AGG                UUcucuuaaccugg uuuga          cga  ucuuu     gga ucc aag a
auua   U   AUCAGAUUAUACAUGU              g     accaguuacc   -g     agaua   c   -   u 


Annotation confidence Low
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Genome context
chr10: 20731632-20731768 [+]

Database links

Mature gma-miR10427a-5p

Accession MIMAT0041684
Description Glycine max gma-miR10427a-5p mature miRNA
Sequence 11 - AAGAGAAUUGGGCUAGAGCUGC - 32
Evidence experimental
Illumina [1]

Mature gma-miR10427a-3p

Accession MIMAT0054526
Description Glycine max gma-miR10427a-3p mature miRNA
Sequence 109 - UUUGUACAUAUUAGACUAGGAUG - 131
Evidence experimental
unknown

References

  1. PubMed ID: 25747880
    Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
    "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
    "Plant Cell (2015) 27:546-562