Stem-loop gma-MIR399l

Accession

MI0033470

Description

Glycine max gma-MIR399l precursor miRNA

Literature search

14 open access papers mention gma-MIR399l
(87 sentences)

Sequence

2660 reads, 24.0 reads per million, 157 experiments

aaaucauucauaGGGCAUGUCUCUUUUGGCAGGuaauggugauuacuuuggauuaauucagagcuaccaaaauaugccucauaaauaguaaucaacuUGCCAAAGGAGAGCUGCCCUGugagugcuug
....(((((((((((((..(((((((((((((((.....((((((((.((((....))))((((...........).)))......)))))))))))))))))))))))..)))))))))))))....

Structure

aaau             UG               aaugg        -------------------------u    u 
    cauucauaGGGCA  UCUCUUUUGGCAGGu     ugauuacu                          ugga u
    |||||||||||||  |||||||||||||||     ||||||||                          ||||  
    gugaguGUCCCGU  AGAGGAAACCGUuca     acuaauga                          acuu a
guuc             CG               -----        uaaauacuccguauaaaaccaucgag    a 

Annotation confidence High

Genome context

chr9: 36735539-36735666 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR399l

Mature gma-miR399l-5p

• Accession: MIMAT0054520
• Description: Glycine max gma-miR399l-5p mature miRNA
• Sequence: 13 - GGGCAUGUCUCUUUUGGCAGG - 33
• Evidence: experimental ; unknown

Mature gma-miR399l-3p

• Accession: MIMAT0041678
• Description: Glycine max gma-miR399l-3p mature miRNA
• Sequence: 98 - UGCCAAAGGAGAGCUGCCCUG - 118
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25747880
   Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
   "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
   "Plant Cell (2015) 27:546-562