Stem-loop gma-MIR10436

Accession

MI0033499

Description

Glycine max gma-MIR10436 precursor miRNA

Sequence

2691 reads, 119.0 reads per million, 157 experiments

uaaagaaaaaUCUUGGCAACACAACUUUUAACAUgcucuuuugcacacauuuuuuauuauugguugaaauuuauugaaaaucacaaauuuuauggaucacaccucucauuuaaugacucuuguuccugauuuuauaguuuucaauaaauuucaaugagagaauguguauuaagagaaAUGUAUUAGAGAAUGUGUUGCUAAcacuucucuucuuuaa
(((((((.....(((((((((((.((((..((((.(((((....((((((((((......(.(((((((((((((((((((....((..(((.(((..(((....((((...))))....)))))))))..))...))))))))))))))))))).)))))))))))...)))))..))))...))))..)))))))))))........))))))).

Structure

-       ---aaaUC           -A    -UA    -g     uugc          uauuau g                   caca  uu   u   uc   ccuc    u 
 uaaagaa        UUGGCAACACA  CUUU   ACAU  cucuu    acacauuuuu      u guugaaauuuauugaaaau    aa  uua gga  aca    ucau  
 |||||||        |||||||||||  ||||   ||||  |||||    ||||||||||      | |||||||||||||||||||    ||  ||| |||  |||    |||| u
 auuucuu        AAUCGUUGUGU  GAGA   UGUA  gagaa    uguguaagag      a uaacuuuaaauaacuuuug    uu  agu ccu  ugu    agua  
a       cucuucac           AA    UUA    aa     -uua          ------ g                   -aua  uu   -   --   ucuc    a 

Annotation confidence Medium

Genome context

chr15: 31181524-31181740 [+]

Mature gma-miR10436-5p

• Accession: MIMAT0041707
• Description: Glycine max gma-miR10436-5p mature miRNA
• Sequence: 11 - UCUUGGCAACACAACUUUUAACAU - 34
• Evidence: experimental ; Illumina [1]

Mature gma-miR10436-3p

• Accession: MIMAT0054547
• Description: Glycine max gma-miR10436-3p mature miRNA
• Sequence: 178 - AUGUAUUAGAGAAUGUGUUGCUAA - 201
• Evidence: experimental ; unknown

References

1. PubMed ID: 25747880
   Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
   "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
   "Plant Cell (2015) 27:546-562