Stem-loop gma-MIR10442

Accession

MI0033507

Description

Glycine max gma-MIR10442 precursor miRNA

Sequence

37124 reads, 134.0 reads per million, 174 experiments

gcuccgcucgCUACAUGCUGCACUUGGAUCCucacuaagugaagaaucacuccauuuagagcaugcucgucuuggccgcaugcacugcaagauuucuauuaugcuuguggagcaaaucacugcauauacuguuaaggaaaggagcgauggcaacauauacuguugccagccaaucucaaguccugcuucacuucaguuaggaUCCAUGUGCAGCAUGUAGUGaguggagua
(((((((((((((((((((((((.((((((((.(((((((((((................((((((...........)))))).(((((((..(......)..))))))).(((......)))...........((((...(((...((((((((.....))))))))......)))...)))).)))))))).))).)))))))).))))))))))))))))))))))).

Structure

-                       U        c   -        aaucacuccauuuagagcaugcucgucuuggccgcaugcacugcaagauuucuauuaugcuuguggagcaaaucacugcauauacuguua    aag   ---cga        u 
 gcuccgcucgCUACAUGCUGCAC UGGAUCCu acu aagugaag                                                                                          agga   gag      uggcaaca a
 ||||||||||||||||||||||| |||||||| ||| ||||||||                                                                                          ||||   |||      |||||||| u
 ugaggugaGUGAUGUACGACGUG ACCUagga uga uucacuuc                                                                                          uccu   cuc      accguugu a
a                       U        u   c        -----------------------------------------------------------------------------------------g    gaa   uaaccg        c 

Annotation confidence High

Genome context

chr18: 29660557-29660787 [+]

Mature gma-miR10442-5p

• Accession: MIMAT0041715
• Description: Glycine max gma-miR10442-5p mature miRNA
• Sequence: 11 - CUACAUGCUGCACUUGGAUCC - 31
• Evidence: experimental ; Illumina [1]

Mature gma-miR10442-3p

• Accession: MIMAT0054554
• Description: Glycine max gma-miR10442-3p mature miRNA
• Sequence: 203 - UCCAUGUGCAGCAUGUAGUG - 222
• Evidence: experimental ; unknown

References

1. PubMed ID: 25747880
   Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
   "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
   "Plant Cell (2015) 27:546-562