Stem-loop gma-MIR4349

Accession

MI0016479

Description

Glycine max gma-MIR4349 precursor miRNA

Sequence

9060 reads, 39.0 reads per million, 177 experiments

ccaagucCCAUAUUGGCUAGAGAUAAGAcaaagauagaauauauaaguggggcgcaauccucacccgagcuagguuuugggguugaguuauagggugaggguugcgccucacuuauauacucuuucuuggccUUAUCUUUAGCCAAUGUGGGAcuugg
(((((((((((((((((((((((((((.(.((((.(((.(((((((((((((((((((((((((((....(((.((........)).)))..))))))))))))))))))))))))))).))).)))).).)))))))))))))))))))))))))))

Structure

                           A a    u   a                           gagc   g  uug 
ccaagucCCAUAUUGGCUAGAGAUAAG c aaga aga uauauaaguggggcgcaauccucaccc    uag uu   g
||||||||||||||||||||||||||| | |||| ||| |||||||||||||||||||||||||||    ||| ||    
gguucAGGGUGUAACCGAUUUCUAUUc g uucu ucu auauauucacuccgcguugggaguggg    auu ag   g
                           c g    u   c                           --au   g  uug 

Annotation confidence High

Genome context

chr19: 44546410-44546567 [+]

Mature gma-miR4349-5p

• Accession: MIMAT0018238
• Description: Glycine max gma-miR4349-5p mature miRNA
• Sequence: 8 - CCAUAUUGGCUAGAGAUAAGA - 28
• Evidence: experimental ; Illumina [1]

Mature gma-miR4349-3p

• Accession: MIMAT0037390
• Description: Glycine max gma-miR4349-3p mature miRNA
• Sequence: 133 - UUAUCUUUAGCCAAUGUGGGA - 153
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14


2. PubMed ID: 25747880
   Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
   "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
   "Plant Cell (2015) 27:546-562