Stem-loop gma-MIR4348d

Accession

MI0033432

Description

Glycine max gma-MIR4348d precursor miRNA

Literature search

1 open access papers mention gma-MIR4348d
(1 sentences)

Sequence

1234909 reads, 2743.0 reads per million, 178 experiments

accaauguaagaCAAUUCACCUGCAGCGAAAGCucacucucauguaaggguugacaacaaugugauggaaaguagugguuaauuaaacucaagauaauagaagacuaugugucaaacuugcaagaugauauuauuaugauaguuggaagcauucagaauagcaagaucaauaugugagaguauccaacaccuaauauuaucaucuuguaaguuugauacauaguuuuucauuauuuuuuuaguuugacuacuaauuucuauggcauuaccaaauaacucgugugugagugagcUUUCGGUGUCGGUGAAUUGCCcuacauugcu
..(((((((.(.(((((((((.(((.(((((((((((((.(((....((((((.....(((((.(((((((.(((((((((((((((...((((((((.(((((((((((((((((((((((((((((((.(((((.(...((((((.((.((((..(((..........))).)))).)).)))))).).))))).))))))))))))))))))))))))))))))).))))))))))))).)))))))))).))))))).)))))......))))))..))).))))))))))))).))).))))))))).).)))))))..

Structure

ac       a a         U   G             u   guaa      -acaac     g       g          -     cuc        a                               u     u aua      a  a    ga   gcaa 
  caaugua g CAAUUCACC GCA CGAAAGCucacuc cau    ggguug      aaugu auggaaa uagugguuaa uuaaa   aagauaau gaagacuaugugucaaacuugcaagaugaua uauua g   guugga gc uuca  aua    g
  ||||||| | ||||||||| ||| ||||||||||||| |||    ||||||      ||||| ||||||| |||||||||| |||||   |||||||| ||||||||||||||||||||||||||||||| ||||| |   |||||| || ||||  |||     
  guuacau C GUUAAGUGG UGU GCUUUcgagugag gug    cucaau      uuacg uaucuuu aucaucaguu gauuu   uuuuauua uuuuugauacauaguuugaauguucuacuau auaau c   caaccu ug gagu  uau    a
uc       c C         C   G             u   --ug      aaacca     g       a          u     ---        c                               u     c --a      a  a    -g   aacu 

Annotation confidence High

Genome context

chr1: 6848789-6849112 [+]

Mature gma-miR4348d-5p

• Accession: MIMAT0054486
• Description: Glycine max gma-miR4348d-5p mature miRNA
• Sequence: 13 - CAAUUCACCUGCAGCGAAAGC - 33
• Evidence: experimental ; unknown

Mature gma-miR4348d-3p

• Accession: MIMAT0041640
• Description: Glycine max gma-miR4348d-3p mature miRNA
• Sequence: 294 - UUUCGGUGUCGGUGAAUUGCC - 314
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25747880
   Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
   "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
   "Plant Cell (2015) 27:546-562