Stem-loop gma-MIR10407b

Accession

MI0033498

Description

Glycine max gma-MIR10407b precursor miRNA

Sequence

15111 reads, 31.0 reads per million, 169 experiments

ugaauuguguauaacgcugauaaauucauccuuaauuuguguuAUGUAGACUCUUUCAUUAACaguaacagauagaAGUUAACGGAUGAAUGAAUUUGUCacacuuuuuu
.(((..((((...(((..(((..(((((((((((((((.((((.(((..(((.((.....)).))).))))))).))))))).))))))))..)))))).))))..))).

Structure

u   uu    aua   cu   aa        -       g    A   AG   C  U 
 gaa  gugu   acg  gau  auucaucc uuaauuu uguu UGU  ACU UU C
 |||  ||||   |||  |||  |||||||| ||||||| |||| |||  ||| || A
 uuu  caca   UGU  UUA  UAAGUAGG AAUUGAa auag aca  uga AA U
u   uu    --C   --   AG        C       g    -   -a   C  U 

Annotation confidence Low

Genome context

chr15: 31453396-31453505 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR10407b

Mature gma-miR10407b-5p

• Accession: MIMAT0054546
• Description: Glycine max gma-miR10407b-5p mature miRNA
• Sequence: 44 - AUGUAGACUCUUUCAUUAAC - 63
• Evidence: experimental ; unknown

Mature gma-miR10407b-3p

• Accession: MIMAT0041706
• Description: Glycine max gma-miR10407b-3p mature miRNA
• Sequence: 77 - AGUUAACGGAUGAAUGAAUUUGUC - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25747880
   Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
   "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
   "Plant Cell (2015) 27:546-562