Stem-loop gma-MIR2109

Accession

MI0010579

Description

Glycine max gma-MIR2109 precursor miRNA

Literature search

11 open access papers mention gma-MIR2109
(21 sentences)

Sequence

2312943 reads, 7328.0 reads per million, 177 experiments

ggugcGAGUGUCUUCGCCUCUGAGAgagauacuaugagaucucaagccuCGGAGGCGUAGAUACUCACACc
((((.((((((((.((((((((((.(((((........)))))....)))))))))).)))))))).))))

Structure

    c        U          ---A     acu 
ggug GAGUGUCU CGCCUCUGAG    gagau   a
|||| |||||||| ||||||||||    |||||    
cCAC CUCAUAGA GCGGAGGCuc    cucua   u
    A        U          cgaa     gag 

Annotation confidence High

Genome context

chr4: 36995886-36995956 [-]

Mature gma-miR2109-5p

• Accession: MIMAT0010086
• Description: Glycine max gma-miR2109-5p mature miRNA
• Sequence: 6 - GAGUGUCUUCGCCUCUGAGA - 25
• Evidence: experimental ; cloned [1], 454 [2], Illumina [3-4]

Mature gma-miR2109-3p

• Accession: MIMAT0032101
• Description: Glycine max gma-miR2109-3p mature miRNA
• Sequence: 50 - CGGAGGCGUAGAUACUCACAC - 70
• Evidence: experimental ; Illumina [5-6]

References

1. PubMed ID: 19084500
   Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules
   "Wang Y, Li P, Cao X, Wang X, Zhang A, Li X"
   "Biochem Biophys Res Commun (2009) 378:799-803


2. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307


3. PubMed ID: 21504877
   MicroRNAs in the shoot apical meristem of soybean
   "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
   "J Exp Bot (2011) 62:2495-2506


4. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553


5. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153


6. PubMed ID: 25747880
   Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
   "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
   "Plant Cell (2015) 27:546-562