Stem-loop gma-MIR399n

Accession

MI0033500

Description

Glycine max gma-MIR399n precursor miRNA

Literature search

14 open access papers mention gma-MIR399n
(87 sentences)

Sequence

2719 reads, 28.0 reads per million, 159 experiments

gcaaaucauucauaGGGCAUGUCUCUUUUGGCAGGuaauggugauuacuuuggauuaauuuagagcuaccaaaauaugucuuauauaguaaucaacuUGCCAAAGGAGAGCUGCCCUGugaguguuug
.((((.(((((((((((((..(((((((((((((((.....((((((((..((((..((((.(......).))))..)))).....)))))))))))))))))))))))..)))))))))))))))))

Structure

g    u             UG               aaugg        ---uu    ua    a ag 
 caaa cauucauaGGGCA  UCUCUUUUGGCAGGu     ugauuacu     ggau  auuu g  c
 |||| |||||||||||||  |||||||||||||||     ||||||||     ||||  |||| |   
 guuu gugaguGUCCCGU  AGAGGAAACCGUuca     acuaauga     ucug  uaaa c  u
-    -             CG               -----        uauau    ua    a ca 

Annotation confidence High

Genome context

chr16: 36109955-36110082 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR399n

Mature gma-miR399n-5p

• Accession: MIMAT0054548
• Description: Glycine max gma-miR399n-5p mature miRNA
• Sequence: 15 - GGGCAUGUCUCUUUUGGCAGG - 35
• Evidence: experimental ; unknown

Mature gma-miR399n-3p

• Accession: MIMAT0041708
• Description: Glycine max gma-miR399n-3p mature miRNA
• Sequence: 98 - UGCCAAAGGAGAGCUGCCCUG - 118
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25747880
   Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
   "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
   "Plant Cell (2015) 27:546-562