miRBase entry: gma-MIR10408

Stem-loop gma-MIR10408


Accession
MI0033436
Description
Glycine max gma-MIR10408 precursor miRNA


Sequence

185183 reads, 370.0 reads per million, 176 experiments
cugguuuugagacuaucugaaagggugccUCACAAAGGGAACGAGGACUCCUUUAAAUAGACUcaauuuucac
.(((..(((((.((((.((((.((((.((((...........)))))))).)))).)))).)))))...))).

Structure
c   -uu     a    c    a    g    ACAA 
 ugg   uugag cuau ugaa gggu ccUC    A
 |||   ||||| |||| |||| |||| ||||    G
 acu   aacUC GAUA AUUU CUCA GGAG    G
c   uuu     A    A    C    -    CAAG 


Annotation confidence High
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Genome context
chr1: 12590738-12590810 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gma-MIR10408
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gma-miR10408-5p

Accession MIMAT0054490
Description Glycine max gma-miR10408-5p mature miRNA
Sequence 30 - UCACAAAGGGAACGAGGACUCCU - 52
Evidence experimental
unknown

Mature gma-miR10408-3p

Accession MIMAT0041644
Description Glycine max gma-miR10408-3p mature miRNA
Sequence 42 - CGAGGACUCCUUUAAAUAGACU - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25747880
    Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
    "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
    "Plant Cell (2015) 27:546-562