Stem-loop gma-MIR10190

Accession

MI0032955

Description

Glycine max gma-MIR10190 precursor miRNA

Sequence

cggagugagaagcuuguaauagucaucaggaauaggaaauuagggagacugaucacuagguggaggagcggaggaggaggcuccgccaggacuagcaugagugccgcaagaggaaacaucaccuguugcgaagaaugagaagcagcggugucaacaugagaugaaggaagaguagcagcgguguugugacuguuacgagcuucugcaaauccuacuuucacaaUCCUGAUGACUAUUAUGAGCUucugcaaguc
....((.((((((((((((((((((((((((....((((.((((...(((.((..((((.(((.(((((..........))))).)))...)))).)).)))..(((((.(((........))).))))).....((((((((((((((..((((((....((..(......)..))...))))))..))))))....)))))).))...)))).))))....)))))))))))))))))))))))))).....

Structure

-cgga  g                        auag    u    gagacugaucacuagguggaggagcggaggaggaggcuccgccaggacuagcaugagugccgcaagaggaaacaucaccuguugcgaagaa  -      ----      gu      gaga  aa ga 
     gu agaagcuuguaauagucaucagga    gaaa uagg                                                                                           ug agaagc    agcggu  caacau    ug  g  a
     || ||||||||||||||||||||||||    |||| ||||                                                                                           || ||||||    ||||||  ||||||    ||  |   
     cg ucuUCGAGUAUUAUCAGUAGUCCU    cuuu aucc                                                                                           ac ucuucg    uuguca  guugug    ac  u  g
cugaa  -                        aaca    c    ----------------------------------------------------------------------------------------uaa  g      agca      gu      -gcg  ga ga 

Annotation confidence Not enough data

Genome context

chr10: 49006840-49007093 [-]

Mature gma-miR10190

• Accession: MIMAT0040955
• Description: Glycine max gma-miR10190 mature miRNA
• Sequence: 224 - UCCUGAUGACUAUUAUGAGCU - 244
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25747880
   Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
   "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
   "Plant Cell (2015) 27:546-562


2. PubMed ID: 25465409
   An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes
   "Arikit S, Xia R, Kakrana A, Huang K, Zhai J, Yan Z, Valdes-Lopez O, Prince S, Musket TA, Nguyen HT, Stacey G, Meyers BC"
   "Plant Cell (2014) 26:4584-4601