Stem-loop gma-MIR10435

Accession

MI0033495

Description

Glycine max gma-MIR10435 precursor miRNA

Sequence

caucggucaacuagcacccgucuuuguaauggaaaaaaacaacgucaguggcuagaaaagaacagacguuauaaauaaggauucaacgacgcacaguauaaagaaccugucguuguugugauccauuucaacgacggguaugccaaaacacauuguuguuuugucccauuucaacgucggguagccuaacacacgucguuguaugcUUCCAUUUCAACGUCGGGUUAGAAagguccgacg
..((((.(..(((..(((((.(.(((.(((((((..(.((((((.(.(((((((..........((((((..((((..((((..(((((((.............(((((((((((..(((...)))..)))))))))))..............)))))))..)))).)))).))))))...)))))......))).)))))).)..))))))).))).).))))))))....).))))..

Structure

ca    u --aa   gc     u u   u       aa a      u a  ------     gaaaagaaca      au    aa    uc       -cacaguauaaaga           uu   a 
  ucgg c    cua  acccg c uug aauggaa  a acaacg c gu      ggcua          gacguu  aaau  ggau  aacgacg              accugucguug  gug  
  |||| |    |||  ||||| | ||| |||||||  | |||||| | ||      |||||          ||||||  ||||  ||||  |||||||              |||||||||||  ||| u
  agcc g    GAU  UGGGC G AAC UUACCUU  u uguugc g ca      ccgau          cugcaa  uuua  ccug  uuguugu              ugggcagcaac  uac  
gc    u gaAA   --     U C   U       cg a      u -  cacaau     -------ggg      -c    -c    uu       uacacaaaaccgua           uu   c 

Annotation confidence Not enough data

Genome context

chr15: 27343801-27344040 [+]

Mature gma-miR10435

• Accession: MIMAT0041703
• Description: Glycine max gma-miR10435 mature miRNA
• Sequence: 207 - UUCCAUUUCAACGUCGGGUUAGAA - 230
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25747880
   Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
   "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
   "Plant Cell (2015) 27:546-562