miRBase entry: gma-MIR10411

Stem-loop gma-MIR10411


Accession
MI0033440
Description
Glycine max gma-MIR10411 precursor miRNA


Sequence

3069 reads, 13.0 reads per million, 142 experiments
uuaaaaaucgUAAUUUUAGACUGAUAUUUUGCCUacaauaucaugcagauauaaauugagcauauugaguauuuagguaagcauaauauauguuuagggguaaauagcauaauuaaggacaauuaagccauuuacaccuaaacauaagcuauacuuuccuaaauaugggauauauauggACUGCUUGUAUGAUUUAUGGAUAUcacaauaucuuuguaauauuguaggcaagagaucagccuaaaacuugacuacucc
.......(((...((((((.(((((.(((((((((((((((..(((((((((((((((((((((((..(((((((((.(((.(((...((((((((((.((((((.((.(((((......))))).)).)))))).))))))))))...))).))).)))))))))..)))).........)))))....))))))))(((((....)))))))))))))))))))))))))).))))).))))))..))).......

Structure
uuaaaaa   UAA      A     A               ca      --------------        ----     ---------    ga         u   c   aua          g      a  a     aa 
       ucg   UUUUAG CUGAU UUUUGCCUacaauau  ugcaga              uauaaauu    gagca         uauu  guauuuagg aag aua   uauguuuagg guaaau gc uaauu  g
       |||   |||||| ||||| |||||||||||||||  ||||||              ||||||||    |||||         ||||  ||||||||| ||| |||   |||||||||| |||||| || |||||   
       agu   aaaauc gacua agaacggauguuaua  auguuu              GUAUUUAG    UUCGU         auag  uauaaaucc uuc uau   auacaaaucc cauuua cg auuaa  g
ccucauc   -uc      c     g               --      cuauaacacUAUAG        UAUG     CAgguauau    gg         u   a   cga          a      c  a     ca 


Annotation confidence Low
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Genome context
chr2: 392903-393160 [+]

Database links

Mature gma-miR10411-5p

Accession MIMAT0041648
Description Glycine max gma-miR10411-5p mature miRNA
Sequence 11 - UAAUUUUAGACUGAUAUUUUGCCU - 34
Evidence experimental
Illumina [1]

Mature gma-miR10411-3p

Accession MIMAT0054494
Description Glycine max gma-miR10411-3p mature miRNA
Sequence 180 - ACUGCUUGUAUGAUUUAUGGAUAU - 203
Evidence experimental
unknown

References

  1. PubMed ID: 25747880
    Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
    "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
    "Plant Cell (2015) 27:546-562