Stem-loop sof-MIR408a

Accession

MI0001765

Description

Saccharum officinarum sof-MIR408a precursor miRNA

Literature search

9 open access papers mention sof-MIR408a
(91 sentences)

Sequence

agaagauggguaugguuggagacagggaugaggcagagcaugggaugaggccaucaacaaaauuuccaauuucuguccuccgcuaggccgcuacugcauuucuguuugcuugcucacaaaacggagggauuugugagaguuaucaggcagaaagaacaaagaaggugccucccuggugaaguggugauggccugaccugagacggcugagagcucagcugguguccuguuguugcuuccucccCUGCACUGCCUCUUCCCUGGCuccccaccguugcccuugc
.......(((((((((.((((.((((((.(((((((.(((.((((.(((((...(((((..................(((...(((((((.((((((.((((((((((....((((((((.(.....).))))))))......)))))))))).............(((.....)))...)))))).)))))))....))).(((((((....)))))))......)))))..))))).)))).))).))))))).)))))).))))..)))).)))))....

Structure

agaagau     -    -u    a      u       a   u    u     cau     -------aaauuuccaauuucuguc   -cgc       c      --------------------------a          --cuug        a g 
       gggua uggu  ggag caggga gaggcag gca ggga gaggc   caaca                         cuc    uaggccg uacugc                           uuucuguuug      cucacaaa c g
       ||||| ||||  |||| |||||| ||||||| ||| |||| |||||   |||||                         |||    ||||||| ||||||                           ||||||||||      |||||||| | a
       cccgu gcca  ccuC GUCCCU CUCCGUC CGU cccu cuucg   guugu                         gag    guccggu guggug                           aaagacggac      gaguguuu g g
---cguu     u    cc    G      U       A   C    c     -uu     ccuguggucgacucgagagucggca   ucca       a      aaguggucccuccguggaagaaacaag          uauuga        a g 

Annotation confidence Not enough data

Genome context

Unknown

Mature sof-miR408a

• Accession: MIMAT0001667
• Description: Saccharum officinarum sof-miR408a mature miRNA
• Sequence: 244 - CUGCACUGCCUCUUCCCUGGC - 264
• Evidence: not_experimental

References

1. PubMed ID: 15916721
   Identification and characterization of new plant microRNAs using EST analysis
   "Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA"
   "Cell Res (2005) 15:336-360


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13