Stem-loop ptc-MIR156g

Accession

MI0002190

Description

Populus trichocarpa ptc-MIR156g precursor miRNA

Literature search

8 open access papers mention ptc-MIR156g
(76 sentences)

Sequence

718785 reads, 12232.0 reads per million, 9 experiments

ggugauguugUUGACAGAAGAUAGAGAGCACagaugaugaaaugcauggagcuuaauugcaucucacuccuuuguGCUCUCUAGUCUUCUGUCAUCaccuuca
(((((......(((((((((((((((((((((((.(((((.(((((...........))))).))).)).)))))))))))).))))))))))))))))....

Structure

----     uguugU           -            u  -   a     ugga 
    gguga      UGACAGAAGAU AGAGAGCACaga ga uga augca    g
    |||||      ||||||||||| |||||||||||| || ||| |||||    c
    ccaCU      ACUGUCUUCUG UCUCUCGuguuu cu acu uacgu    u
acuu     ------           A            c  c   c     uaau 

Annotation confidence High

Genome context

CM000341.2: 11875533-11875635 [-]

Mature ptc-miR156g-5p

• Accession: MIMAT0001896
• Description: Populus trichocarpa ptc-miR156g-5p mature miRNA
• Sequence: 11 - UUGACAGAAGAUAGAGAGCAC - 31
• Evidence: experimental ; cloned [1]

Mature ptc-miR156g-3p

• Accession: MIMAT0055564
• Description: Populus trichocarpa ptc-miR156g-3p mature miRNA
• Sequence: 76 - GCUCUCUAGUCUUCUGUCAUC - 96
• Evidence: experimental ; unknown

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


3. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203