Stem-loop gma-MIR169a

Accession

MI0001791

Description

Glycine max gma-MIR169a precursor miRNA

Literature search

26 open access papers mention gma-MIR169a
(102 sentences)

Sequence

363373 reads, 2053.0 reads per million, 178 experiments

aagaggaagagagagugaugCAGCCAAGGAUGACUUGCCGGCguuauuauuugcucauguucaugcucaccgguuuccuugccGGCAAGUUGUGUUUGGCUAUGUuuugcucucuucuucu
.((((((((((((...((((.(((((((.((((((((((((((.........(((..((........))..))).....)))))))))))))).))))))).))))...))))))))))))

Structure

a            agu    C       G              uuauuauuu   ca  uuc 
 agaggaagagag   gaug AGCCAAG AUGACUUGCCGGCg         gcu  ug   a
 ||||||||||||   |||| ||||||| ||||||||||||||         |||  ||    
 ucuucuucucuc   uUGU UCGGUUU UGUUGAACGGccgu         ugg  ac   u
-            guu    A       G              ----uccuu   cc  ucg 

Annotation confidence High

Genome context

chr9: 38336014-38336134 [+]

Mature gma-miR169a-5p

• Accession: MIMAT0001693
• Description: Glycine max gma-miR169a-5p mature miRNA
• Sequence: 21 - CAGCCAAGGAUGACUUGCCGGC - 42
• Evidence: experimental ; 454 [1,3], Northern [1]

Mature gma-miR169a-3p

• Accession: MIMAT0054015
• Description: Glycine max gma-miR169a-3p mature miRNA
• Sequence: 84 - GGCAAGUUGUGUUUGGCUAUGU - 105
• Evidence: experimental ; unknown

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160


3. PubMed ID: 21504877
   MicroRNAs in the shoot apical meristem of soybean
   "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
   "J Exp Bot (2011) 62:2495-2506