Stem-loop ptc-MIR166f

Accession

MI0002223

Description

Populus trichocarpa ptc-MIR166f precursor miRNA

Literature search

6 open access papers mention ptc-MIR166f
(22 sentences)

Sequence

41983794 reads, 592121.0 reads per million, 9 experiments

gguguguugaggGGAAUGUUGGCUGGCUCGAAGcuuaagcaaagaguuuccuaacaugaaacaacuguuaaggcuUCGGACCAGGCUUCAUUCCCCucaaacaua
.((((.((((((((((((..(.((((.(((((((((.((((....(((((.......)))))...)))).))))))))).)))).)..)))))))))))))))).

Structure

g    g            UU G    C         a    aaga     cu 
 gugu uugaggGGAAUG  G CUGG UCGAAGcuu agca    guuuc  a
 |||| ||||||||||||  | |||| ||||||||| ||||    |||||  a
 uaca aacuCCCCUUAC  C GACC GGCUucgga uugu    caaag  c
a    -            UU G    A         a    -caa     ua 

Annotation confidence High

Genome context

CM000343.2: 3117083-3117187 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR166f

Mature ptc-miR166f-5p

• Accession: MIMAT0055584
• Description: Populus trichocarpa ptc-miR166f-5p mature miRNA
• Sequence: 13 - GGAAUGUUGGCUGGCUCGAAG - 33
• Evidence: experimental ; unknown

Mature ptc-miR166f-3p

• Accession: MIMAT0001929
• Description: Populus trichocarpa ptc-miR166f-3p mature miRNA
• Sequence: 76 - UCGGACCAGGCUUCAUUCCCC - 96
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604