Stem-loop gma-MIR168a

Accession

MI0001779

Description

Glycine max gma-MIR168a precursor miRNA

Literature search

25 open access papers mention gma-MIR168a
(95 sentences)

Sequence

2317580 reads, 8734.0 reads per million, 178 experiments

cacugugcggucucuaauUCGCUUGGUGCAGGUCGGGAACcgguuuucgcgcggaauggaggagcggucgccggcgccgaauuggaUCCCGCCUUGCAUCAACUGAAUcggaggccgcggugaac
((((..(((((((((.(((((.((((((((((.(((((.(((((((..((((((..((......))....)).)))).))))))).))))).)))))))))).))))).)))))))))))))...

Structure

---    gu         a     C          U     A       uc    -  --aa  ga 
   cacu  gcggucucu auUCG UUGGUGCAGG CGGGA Ccgguuu  gcgc gg    ug  g
   ||||  ||||||||| ||||| |||||||||| ||||| |||||||  |||| ||    ||   
   gugg  cgccggagg UAAGU AACUACGUUC GCCCU gguuaag  cgcg cc    gc  g
caa    --         c     C          C     a       -c    g  gcug  ga 

Annotation confidence High

Genome context

chr9: 44068673-44068797 [-]

Mature gma-miR168a-5p

• Accession: MIMAT0001681
• Description: Glycine max gma-miR168a-5p mature miRNA
• Sequence: 19 - UCGCUUGGUGCAGGUCGGGAAC - 40
• Evidence: experimental ; 454 [2], Northern [2], Illumina [3]

Mature gma-miR168a-3p

• Accession: MIMAT0054007
• Description: Glycine max gma-miR168a-3p mature miRNA
• Sequence: 87 - UCCCGCCUUGCAUCAACUGAAU - 108
• Evidence: experimental ; unknown

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160


3. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14