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Prediction of novel miRNAs and associated target genes in Glycine max |
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|---|---|
| PubMed ID | 20122185 |
| Authors | Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G |
| Journal | BMC Bioinformatics |
| Volume | 11 |
| Pages | S14 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| gma-MIR168a | MI0001779 | None | chr9 | 44068673 | 44068797 | - | - |
| gma-MIR390b | MI0007215 | None | chr14 | 46392430 | 46392532 | + | - |
| gma-MIR171b | MI0007217 | None | chr4 | 50115835 | 50115926 | + | - |
| gma-MIR482a | MI0007218 | None | chr2 | 7873063 | 7873157 | + | - |
| gma-MIR1509a | MI0007221 | None | chr17 | 9813056 | 9813166 | + | - |
| gma-MIR1510a | MI0007222 | None | chr16 | 31887382 | 31887474 | + | - |
| gma-MIR1511 | MI0007223 | None | chr18 | 20910835 | 20910933 | + | - |
| gma-MIR167e | MI0010725 | None | chr20 | 39002092 | 39002200 | + | - |
| gma-MIR1509b | MI0010730 | None | chr5 | 1350441 | 1350549 | + | - |
| gma-MIR4340 | MI0016469 | None | chr19 | 2095404 | 2095468 | - | - |
| gma-MIR4341 | MI0016470 | None | chr6 | 12004246 | 12004361 | - | - |
| gma-MIR4342 | MI0016471 | None | chr18 | 14013079 | 14013145 | + | - |
| gma-MIR4343a | MI0016472 | None | chr15 | 18637694 | 18637790 | - | - |
| gma-MIR4344 | MI0016473 | None | chr18 | 19606858 | 19606976 | - | - |
| gma-MIR4345 | MI0016474 | None | chr14 | 48700139 | 48700232 | - | - |
| gma-MIR4364b | MI0016475 | None | chr18 | 46677081 | 46677183 | + | - |
| gma-MIR4346 | MI0016476 | None | None | None | - | ||
| gma-MIR4347 | MI0016477 | None | chr15 | 12783164 | 12783304 | + | - |
| gma-MIR4348a | MI0016478 | None | chr12 | 37311016 | 37311160 | - | - |
| gma-MIR4349 | MI0016479 | None | chr19 | 44546410 | 44546567 | + | - |
| gma-MIR4350 | MI0016480 | None | None | None | - | ||
| gma-MIR4351 | MI0016481 | None | None | None | - | ||
| gma-MIR4352a | MI0016482 | None | chr10 | 24453395 | 24453530 | + | - |
| gma-MIR4353 | MI0016483 | None | chr6 | 51362622 | 51362680 | - | - |
| gma-MIR1520e | MI0016484 | None | chr17 | 17845222 | 17845385 | - | - |
| gma-MIR1520f | MI0016485 | None | chr2 | 17814168 | 17814270 | - | - |
| gma-MIR1520g | MI0016486 | None | chr12 | 32708631 | 32708738 | - | - |
| gma-MIR4354 | MI0016487 | None | chr9 | 42023868 | 42024017 | + | - |
| gma-MIR4355 | MI0016488 | None | chr18 | 1371151 | 1371310 | - | - |
| gma-MIR4356 | MI0016489 | None | chr3 | 34210830 | 34210909 | + | - |
| gma-MIR4357 | MI0016490 | None | chr16 | 25716585 | 25716759 | - | - |
| gma-MIR4358 | MI0016491 | None | chr6 | 3663700 | 3663865 | - | - |
| gma-MIR4359a | MI0016492 | None | chr1 | 42312667 | 42312778 | - | - |
| gma-MIR4360 | MI0016493 | None | chr4 | 6566470 | 6566549 | - | - |
| gma-MIR4359b | MI0016494 | None | chr7 | 16796162 | 16796228 | + | - |
| gma-MIR4387c | MI0016495 | None | chr7 | 16521619 | 16521750 | + | - |
| gma-MIR1520h | MI0016496 | None | chr6 | 15546820 | 15546906 | + | - |
| gma-MIR4361 | MI0016497 | None | chr16 | 15914012 | 15914074 | + | - |
| gma-MIR1520i | MI0016498 | None | chr3 | 34949369 | 34949512 | - | - |
| gma-MIR4362 | MI0016499 | None | chr13 | 36082340 | 36082537 | + | - |
| gma-MIR4363 | MI0016500 | None | chr17 | 19200043 | 19200157 | + | - |
| gma-MIR4364a | MI0016501 | None | chr13 | 2006154 | 2006264 | + | - |
| gma-MIR4380a | MI0016502 | None | chr1 | 39453514 | 39453666 | - | - |
| gma-MIR396d | MI0016503 | None | chr17 | 8782240 | 8782347 | - | - |
| gma-MIR1520j | MI0016504 | None | chr11 | 5133814 | 5133989 | - | - |
| gma-MIR4365 | MI0016505 | None | chr10 | 11249866 | 11249961 | - | - |
| gma-MIR4366 | MI0016506 | None | chr5 | 29557157 | 29557418 | - | - |
| gma-MIR4367 | MI0016507 | None | chr1 | 2417160 | 2417384 | + | - |
| gma-MIR4368a | MI0016508 | None | chr18 | 55058212 | 55058299 | - | - |
| gma-MIR4371c | MI0016509 | None | chr5 | 2489793 | 2489939 | - | - |
| gma-MIR4368b | MI0016510 | None | chr2 | 39873834 | 39873978 | + | - |
| gma-MIR4369 | MI0016511 | None | chr7 | 13628703 | 13628781 | - | - |
| gma-MIR4370 | MI0016512 | None | chr11 | 28937222 | 28937287 | + | - |
| gma-MIR4387b | MI0016513 | None | chr7 | 4991373 | 4991484 | + | - |
| gma-MIR4371a | MI0016514 | None | chr17 | 4626871 | 4626998 | + | - |
| gma-MIR4371b | MI0016515 | None | chr7 | 24370816 | 24370998 | - | - |
| gma-MIR4372a | MI0016516 | None | chr10 | 49480492 | 49480612 | - | - |
| gma-MIR4352b | MI0016517 | None | chr14 | 13919818 | 13919987 | + | - |
| gma-MIR4373 | MI0016518 | None | chr17 | 6360081 | 6360184 | - | - |
| gma-MIR4374a | MI0016519 | None | chr1 | 42014046 | 42014212 | - | - |
| gma-MIR4375 | MI0016520 | None | chr9 | 38836079 | 38836146 | - | - |
| gma-MIR391 | MI0016521 | None | chr13 | 42292832 | 42292941 | + | - |
| gma-MIR4377 | MI0016522 | None | chr4 | 17757695 | 17757862 | + | - |
| gma-MIR4374b | MI0016523 | None | chr18 | 44789134 | 44789239 | + | - |
| gma-MIR4378a | MI0016524 | None | chr10 | 44388201 | 44388363 | - | - |
| gma-MIR4378b | MI0016525 | None | chr9 | 31722886 | 31722976 | - | - |
| gma-MIR4379 | MI0016526 | None | chr7 | 1503356 | 1503439 | - | - |
| gma-MIR482b | MI0016527 | None | chr20 | 36454144 | 36454212 | + | - |
| gma-MIR4380b | MI0016528 | None | chr19 | 4425779 | 4425854 | + | - |
| gma-MIR4381 | MI0016529 | None | chr15 | 47293543 | 47293680 | - | - |
| gma-MIR4382 | MI0016530 | None | chr6 | 18881198 | 18881368 | + | - |
| gma-MIR4383 | MI0016531 | None | chr2 | 26866450 | 26866576 | + | - |
| gma-MIR1520k | MI0016532 | None | chr19 | 5256979 | 5257106 | + | - |
| gma-MIR1520l | MI0016533 | None | chr18 | 51411526 | 51411635 | + | - |
| gma-MIR1520m | MI0016534 | None | chr4 | 9565785 | 9565912 | - | - |
| gma-MIR4384 | MI0016535 | None | chr12 | 9054935 | 9055000 | + | - |
| gma-MIR1520n | MI0016536 | None | chr14 | 47470517 | 47470612 | + | - |
| gma-MIR1520o | MI0016537 | None | chr17 | 13437941 | 13438133 | + | - |
| gma-MIR4385 | MI0016538 | None | chr20 | 25118846 | 25118941 | - | - |
| gma-MIR4386 | MI0016539 | None | chr7 | 1369485 | 1369539 | + | - |
| gma-MIR4387a | MI0016540 | None | KQ474119.1 | 490978 | 491089 | + | - |
| gma-MIR4388 | MI0016541 | None | chr10 | 46504519 | 46504678 | - | - |
| gma-MIR4387d | MI0016542 | None | chr18 | 43759747 | 43759852 | - | - |
| gma-MIR4389 | MI0016543 | None | chr13 | 32881750 | 32881896 | - | - |
| gma-MIR4390 | MI0016544 | None | chr17 | 15303731 | 15303796 | + | - |
| gma-MIR4391 | MI0016545 | None | chr1 | 22864160 | 22864278 | + | - |
| gma-MIR4392 | MI0016546 | None | chr9 | 49977292 | 49977401 | + | - |
| gma-MIR4343b | MI0016547 | None | chr19 | 35003600 | 35003666 | - | - |
| gma-MIR167g | MI0016548 | None | chr10 | 39602156 | 39602233 | + | - |
| gma-MIR4393a | MI0016549 | None | chr10 | 1366374 | 1366509 | - | - |
| gma-MIR4394 | MI0016550 | None | chr10 | 20498009 | 20498098 | - | - |
| gma-MIR4395 | MI0016551 | None | chr2 | 33485031 | 33485139 | + | - |
| gma-MIR4396 | MI0016552 | None | chr18 | 3429421 | 3429478 | - | - |
| gma-MIR4397 | MI0016553 | None | chr4 | 38550859 | 38551015 | - | - |
| gma-MIR1520r | MI0016554 | None | chr19 | 49004957 | 49005071 | - | - |
| gma-MIR4398 | MI0016555 | None | chr1 | 44037488 | 44037552 | + | - |
| gma-MIR4399 | MI0016556 | None | chr3 | 23233443 | 23233593 | + | - |
| gma-MIR4400 | MI0016557 | None | chr20 | 1756046 | 1756202 | + | - |
| gma-MIR4393b | MI0016558 | None | chr1 | 49068990 | 49069101 | - | - |
| gma-MIR156f | MI0016559 | None | chr2 | 47699715 | 47699820 | - | - |
| gma-MIR4401a | MI0016560 | None | chr14 | 28771219 | 28771334 | + | - |
| gma-MIR4402 | MI0016561 | None | chr20 | 44128634 | 44128808 | - | - |
| gma-MIR4403 | MI0016562 | None | chr4 | 665909 | 666012 | + | - |
| gma-MIR1520p | MI0016563 | None | chr11 | 4663268 | 4663406 | + | - |
| gma-MIR4404 | MI0016564 | None | chr13 | 20028554 | 20028615 | - | - |
| gma-MIR4405 | MI0016565 | None | chr6 | 9334440 | 9334565 | + | - |
| gma-MIR4406 | MI0016566 | None | chr1 | 40696309 | 40696432 | + | - |
| gma-MIR4407 | MI0016567 | None | chr20 | 47144592 | 47144722 | + | - |
| gma-MIR4408 | MI0016568 | None | chr8 | 28086876 | 28087016 | + | - |
| gma-MIR4409 | MI0016569 | None | chr16 | 5771195 | 5771255 | - | - |
| gma-MIR4410 | MI0016570 | None | chr5 | 810922 | 810992 | - | - |
| gma-MIR169d | MI0016571 | None | chr15 | 14186946 | 14187033 | + | - |
| gma-MIR4411 | MI0016572 | None | chr1 | 12590615 | 12590670 | + | - |
| gma-MIR1520q | MI0016573 | None | chr8 | 13091468 | 13091583 | - | - |
| gma-MIR172f | MI0016574 | None | chr11 | 26905395 | 26905527 | + | - |
| gma-MIR171c | MI0016575 | None | chr7 | 43625963 | 43626066 | - | - |
| gma-MIR169e | MI0016576 | None | chr15 | 14210033 | 14210152 | + | - |
| gma-MIR394b | MI0016577 | None | chr14 | 48784355 | 48784458 | + | - |
| gma-MIR4412 | MI0016578 | None | chr4 | 37037465 | 37037552 | - | - |
| gma-MIR4413a | MI0016579 | None | chr19 | 1832822 | 1832908 | + | - |
| gma-MIR156g | MI0016580 | None | chr19 | 8868796 | 8868913 | - | - |
| gma-MIR159d | MI0016581 | None | None | None | - | ||
| gma-MIR394a | MI0016582 | None | chr17 | 41517111 | 41517267 | + | - |
| gma-MIR4414a | MI0016583 | None | chr20 | 36756848 | 36756975 | + | - |
| gma-MIR4415a | MI0016584 | None | chr18 | 56193529 | 56193704 | + | - |
| gma-MIR4416a | MI0016585 | None | chr19 | 40891340 | 40891469 | - | - |
| gma-MIR396e | MI0016586 | None | chr17 | 35037484 | 35037597 | - | - |
| gma-MIR172a | MI0001780 | None | chr12 | 6139598 | 6139756 | - | - |
| gma-MIR172b | MI0001781 | None | chr13 | 41847312 | 41847464 | - | - |
| gma-MIR172c | MI0010727 | None | chr18 | 2979182 | 2979334 | + | - |
| gma-MIR172d | MI0010728 | None | chr14 | 5659819 | 5659968 | + | - |
| gma-MIR172e | MI0010729 | None | chr11 | 31482550 | 31482702 | - | - |
| gma-MIR172g | MI0018668 | None | chr10 | 31996846 | 31996959 | - | - |
| gma-MIR172h | MI0018669 | None | chr10 | 44054389 | 44054479 | + | - |
| gma-MIR172i | MI0018670 | None | chr15 | 2892841 | 2893001 | - | - |
| gma-MIR172j | MI0018671 | None | chr20 | 42009499 | 42009588 | - | - |
| gma-MIR172k | MI0019746 | None | chr12 | 33517484 | 33517617 | + | - |
| gma-MIR172l | MI0019750 | None | chr13 | 43075243 | 43075420 | + | - |