Stem-loop gma-MIR4378a

Accession

MI0016524

Description

Glycine max gma-MIR4378a precursor miRNA

Literature search

1 open access papers mention gma-MIR4378a
(1 sentences)

Sequence

5665 reads, 17.0 reads per million, 175 experiments

ucAUAGGACUGUCUUAGAAUGGUGUAcauucuaaaacagucuccaacacaaacucgucuuagaaugucauacauuuuaagacgggcuuaugucauacacucuaagauggauuuauccuggggauugucuuagaauguacaacAUUAUAAGACGGUCUGCGUGA
((((.(((((((((((.((((.((((((((((((.(((((((((((((.((.(((((((((((((((...))))))))))))))).)).)))...............(((....))))))))))))).)))))))))))).)))).)))))))))))..))))

Structure

    -A           G    G            a          -------------------------   c  a               c 
ucAU  GGACUGUCUUA AAUG UGUAcauucuaa acagucucca                         aca aa cucgucuuagaaugu  
||||  ||||||||||| |||| |||||||||||| ||||||||||                         ||| || ||||||||||||||| a
AGUG  UCUGGCAGAAU UUAc acauguaagauu uguuaggggu                         ugu uu gggcagaauuuuaca  
    CG           A    a            c          ccuauuuagguagaaucucacauac   a  c               u 

Annotation confidence Low

Genome context

chr10: 44388201-44388363 [-]

Mature gma-miR4378a-5p

• Accession: MIMAT0018283
• Description: Glycine max gma-miR4378a-5p mature miRNA
• Sequence: 3 - AUAGGACUGUCUUAGAAUGGUGUA - 26
• Evidence: experimental ; Illumina [1]

Mature gma-miR4378a-3p

• Accession: MIMAT0054113
• Description: Glycine max gma-miR4378a-3p mature miRNA
• Sequence: 143 - AUUAUAAGACGGUCUGCGUGA - 163
• Evidence: experimental ; unknown

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14