Stem-loop gma-MIR390b

Accession

MI0007215

Description

Glycine max gma-MIR390b precursor miRNA

Literature search

20 open access papers mention gma-MIR390b
(80 sentences)

Sequence

468327 reads, 703.0 reads per million, 176 experiments

agaaucuguaAAGCUCAGGAGGGAUAGCACCgugauacugaugauuauauguucauaguuguauacguacuuggCGCUAUCUAUCUUGAGCUUCAuggcuucu
((((.((((.((((((((((.(((((((.(((.(.(((..((((((((......))))))))....)))).))).))))))).)))))))))).)))).))))

Structure

    u    a          G       A   u a   --ug        au 
agaa cugu AAGCUCAGGA GGAUAGC CCg g uac    augauuau  g
|||| |||| |||||||||| ||||||| ||| | |||    ||||||||   
ucuu gguA UUCGAGUUCU UCUAUCG ggu c aug    uguugaua  u
    c    C          A       C   u -   caua        cu 

Annotation confidence High

Genome context

chr14: 46392430-46392532 [+]

Mature gma-miR390b-5p

• Accession: MIMAT0007361
• Description: Glycine max gma-miR390b-5p mature miRNA
• Sequence: 11 - AAGCUCAGGAGGGAUAGCACC - 31
• Evidence: experimental ; 454 [1], Illumina [2]

Mature gma-miR390b-3p

• Accession: MIMAT0020935
• Description: Glycine max gma-miR390b-3p mature miRNA
• Sequence: 75 - CGCUAUCUAUCUUGAGCUUCA - 95
• Evidence: experimental ; SOLiD [3]

References

1. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160


2. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14


3. PubMed ID: 21751852
   Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
   "Radwan O, Liu Y, Clough SJ"
   "Mol Plant Microbe Interact (2011) 24:958-972