Stem-loop gma-MIR172i

Accession

MI0018670

Description

Glycine max gma-MIR172i precursor miRNA

Literature search

27 open access papers mention gma-MIR172i
(124 sentences)

Sequence

gcagguGCAGCAGCAUCAAGAUUCACAccgccuaauuugcuaggacuucaggacugcacacgcuuaauuauacauacauauauacauauauguuagcucuuuguggagugcggaauaaaguucuauuuuagaugugGGAAUCUUGAUGAUGCUGCAUcagc
((.(((((((((.(((((((((((.(((...((((.....((((((((.....((((((.(((............(((((((....))))))).........)))..))))))....))))))))..))))..))).))))))))))).))))))))).))

Structure

  a         G           A   cgc    uuugc        cagga      -a   uuaauuauacau       u 
gc gguGCAGCA CAUCAAGAUUC CAc   cuaa     uaggacuu     cugcac  cgc            acauaua a
|| ||||||||| ||||||||||| |||   ||||     ||||||||     ||||||  |||            |||||||  
cg cUACGUCGU GUAGUUCUAAG gug   gauu     aucuugaa     ggcgug  gug            uguauau c
  a         A           G   -ua    ---uu        -auaa      ag   ---uuucucgau       a 

Annotation confidence Not enough data

Genome context

chr15: 2892841-2893001 [-]

Mature gma-miR172i-5p

• Accession: MIMAT0021659
• Description: Glycine max gma-miR172i-5p mature miRNA
• Sequence: 7 - GCAGCAGCAUCAAGAUUCACA - 27
• Evidence: experimental ; Illumina [1]

Mature gma-miR172i-3p

• Accession: MIMAT0022996
• Description: Glycine max gma-miR172i-3p mature miRNA
• Sequence: 137 - GGAAUCUUGAUGAUGCUGCAU - 157
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553