Stem-loop gma-MIR4406

Accession

MI0016566

Description

Glycine max gma-MIR4406 precursor miRNA

Literature search

1 open access papers mention gma-MIR4406
(1 sentences)

Sequence

27019 reads, 60.0 reads per million, 169 experiments

caaucuauAUUGAUUCUGAGAGAACCGGUGUAgaaugauaaucauucuaagacggccuucgacaugugaccguuuuagaaucguuagcauucuacaucggucgucUCAGAACCGAUGUAGAAUG
...(((((((((.((((((((..((((((((((((((.((((.((((((((((((((........).).)))))))))))).)))).))))))))))))))..)))))))).)))))))))...

Structure

caa         A        GA              a    c            - - uuc 
   ucuauAUUG UUCUGAGA  ACCGGUGUAgaaug uaau auucuaagacgg c c   g
   ||||||||| ||||||||  |||||||||||||| |||| |||||||||||| | |    
   AGAUGUAGC AAGACUcu  uggcuacaucuuac auug uaagauuuugcc g g   a
GUA         C        gc              g    c            a u uac 

Annotation confidence Low

Genome context

chr1: 40696309-40696432 [+]

Mature gma-miR4406-5p

• Accession: MIMAT0018325
• Description: Glycine max gma-miR4406-5p mature miRNA
• Sequence: 9 - AUUGAUUCUGAGAGAACCGGUGUA - 32
• Evidence: experimental ; Illumina [1-2]

Mature gma-miR4406-3p

• Accession: MIMAT0054150
• Description: Glycine max gma-miR4406-3p mature miRNA
• Sequence: 106 - UCAGAACCGAUGUAGAAUG - 124
• Evidence: experimental ; unknown

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14


2. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153