Stem-loop gma-MIR171b

Accession

MI0007217

Description

Glycine max gma-MIR171b precursor miRNA

Literature search

17 open access papers mention gma-MIR171b
(41 sentences)

Sequence

544851 reads, 822.0 reads per million, 170 experiments

uagacacggCGUGAUAUUGGUACGGCUCAUCUUaauucaaccauuauaucaacaauugagaCGAGCCGAAUCAAUAUCACUCUuguuugcuu
((((((.((.(((((((((((.((((((.((((((((................)))))))).)))))).))))))))))).))))))))...

Structure

---      c  C           A      A        caaccau 
   uagaca gg GUGAUAUUGGU CGGCUC UCUUaauu       u
   |||||| || ||||||||||| |||||| ||||||||        
   guuugu UC CACUAUAACUA GCCGAG agaguuaa       a
uuc      -  U           A      C        caacuau 

Annotation confidence High

Genome context

chr4: 50115835-50115926 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR171b

Mature gma-miR171b-5p

• Accession: MIMAT0017336
• Description: Glycine max gma-miR171b-5p mature miRNA
• Sequence: 10 - CGUGAUAUUGGUACGGCUCAUCUU - 33
• Evidence: experimental ; Illumina [2], SOLiD [3]

Mature gma-miR171b-3p

• Accession: MIMAT0007363
• Description: Glycine max gma-miR171b-3p mature miRNA
• Sequence: 62 - CGAGCCGAAUCAAUAUCACUCU - 83
• Evidence: experimental ; 454 [1], Northern [1], SOLiD [3]

References

1. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160


2. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14


3. PubMed ID: 21751852
   Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
   "Radwan O, Liu Y, Clough SJ"
   "Mol Plant Microbe Interact (2011) 24:958-972