Stem-loop gma-MIR4403

Accession

MI0016562

Description

Glycine max gma-MIR4403 precursor miRNA

Literature search

1 open access papers mention gma-MIR4403
(5 sentences)

Sequence

28445 reads, 64.0 reads per million, 178 experiments

gacACGGACACCGAACACGACACGGACacggacacgugaauaccugucaaacacaucaaauucaacccggacacgggcgucgAUGUUGUGUCGGUGUCGGuguc
(((((.((((((((.(((((((..(((...((((.((....)).)))).................((((....)))).)))..))))))))))))))).)))))

Structure

     G        A       CG   ---------------------------acg    c  g 
gacAC GACACCGA CACGACA  GAC                              gaca gu a
||||| |||||||| |||||||  |||                              |||| ||  
cuguG CUGUGGCU GUGUUGU  cug                              cugu ca a
     G        -       Ag   cgggcacaggcccaacuuaaacuacacaaa    c  u 

Annotation confidence Low

Genome context

chr4: 665909-666012 [+]

Mature gma-miR4403-5p

• Accession: MIMAT0018321
• Description: Glycine max gma-miR4403-5p mature miRNA
• Sequence: 4 - ACGGACACCGAACACGACACGGAC - 27
• Evidence: experimental ; Illumina [1]

Mature gma-miR4403-3p

• Accession: MIMAT0054147
• Description: Glycine max gma-miR4403-3p mature miRNA
• Sequence: 83 - AUGUUGUGUCGGUGUCGG - 100
• Evidence: experimental ; unknown

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14