Stem-loop gma-MIR172f

Accession

MI0016574

Description

Glycine max gma-MIR172f precursor miRNA

Literature search

28 open access papers mention gma-MIR172f
(122 sentences)

Sequence

65631 reads, 369.0 reads per million, 173 experiments

gcggauGUAGCAUCAUCAAGAUUCACAugcaaacgcagguggugggugggacugugaugcaaucuaagugcuacugugccaaccaaagccauaggucuuuuggaagugAGAAUCUUGAUGAUGCUGCAUCagc
((.(((((((((((((((((((((.(((((....))...((((.(((((.(((..(((...)))..))).)))))..)))).((((((((...)))..)))))..))).))))))))))))))))))))).))

Structure

  g                     A   -------------gcaaacgcagg    -g     g   gu   g 
gc gauGUAGCAUCAUCAAGAUUC CAu                        uggu  ggugg acu  gau  
|| ||||||||||||||||||||| |||                        ||||  ||||| |||  ||| c
cg CUACGUCGUAGUAGUUCUAAG gug                        accg  ucauc uga  cua  
  a                     A   aagguuuucuggauaccgaaacca    ug     g   au   a 

Annotation confidence High

Genome context

chr11: 26905395-26905527 [+]

Mature gma-miR172f-5p

• Accession: MIMAT0054158
• Description: Glycine max gma-miR172f-5p mature miRNA
• Sequence: 7 - GUAGCAUCAUCAAGAUUCACA - 27
• Evidence: experimental ; unknown

Mature gma-miR172f-3p

• Accession: MIMAT0018333
• Description: Glycine max gma-miR172f-3p mature miRNA
• Sequence: 109 - AGAAUCUUGAUGAUGCUGCAUC - 130
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14