Stem-loop gma-MIR4345

Accession

MI0016474

Description

Glycine max gma-MIR4345 precursor miRNA

Literature search

1 open access papers mention gma-MIR4345
(1 sentences)

Sequence

87148 reads, 214.0 reads per million, 174 experiments

ggaagcUAAGACGGAACUUACAAAGAUUguucagguagacauuugagaauaaaugucugucuugaacaAUCUUUUUAAGUUUCGUCUUAacuuu
.((((.((((((((((((((.((((((((((((((((((((((((....)))))))))).)))))))))))))).)))))))))))))).))))

Structure

g    c              C              -          a 
 gaag UAAGACGGAACUUA AAAGAUUguucagg uagacauuug g
 |||| |||||||||||||| |||||||||||||| ||||||||||  
 uuuc AUUCUGCUUUGAAU UUUCUAacaaguuc gucuguaaau a
-    a              U              u          a 

Annotation confidence Low

Genome context

chr14: 48700139-48700232 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR4345

Mature gma-miR4345-5p

• Accession: MIMAT0018233
• Description: Glycine max gma-miR4345-5p mature miRNA
• Sequence: 7 - UAAGACGGAACUUACAAAGAUU - 28
• Evidence: experimental ; Illumina [1]

Mature gma-miR4345-3p

• Accession: MIMAT0054068
• Description: Glycine max gma-miR4345-3p mature miRNA
• Sequence: 69 - AUCUUUUUAAGUUUCGUCUUA - 89
• Evidence: experimental ; unknown

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14