Stem-loop gma-MIR4366

Accession

MI0016506

Description

Glycine max gma-MIR4366 precursor miRNA

Literature search

1 open access papers mention gma-MIR4366
(1 sentences)

Sequence

12338 reads, 80.0 reads per million, 178 experiments

aagagaugugaaaacaccuuagaaguugagCUAGAUAGAAAAAGAAAGGCUCUugaaacaagauccaaauuccucaaagcaugcaaaccaaccaacaaaucucuacuuaguagggaguccccuuucaaaaaauuggagaagguaaauccCUACUUAGUAGAGAUUUGUUGGuugguuugcaugcuuuggggaauuuggaucuuguuucaacagccuuuccuuuuauaucuaacucaacuucuaagguguuuucacaucucuu
((((((((((((((((((((((((((((((.((((((.((((.((((((((.(((((((((((((((((((((((((((((((((((((((((((((((((((((((.((((((((....((((((((....)))))..)))....)))))))).))))))))))))))))))))))))))))))))))))))))))))))))))))))).)))))))).)))).)))))).))))))))))))))))))))))))))))))

Structure

                              C      G    A        C                                                       u        gucc   --     a 
aagagaugugaaaacaccuuagaaguugag UAGAUA AAAA GAAAGGCU Uugaaacaagauccaaauuccucaaagcaugcaaaccaaccaacaaaucucuacu aguaggga    ccu  uucaa a
|||||||||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    |||  |||||  
uucucuacacuuuuguggaaucuucaacuc aucuau uuuu cuuuccga aacuuuguucuagguuuaagggguuucguacguuugguuGGUUGUUUAGAGAUGA UCAUCccu    gga  agguu a
                              a      a    c        c                                                       U        aaau   ag     a 

Annotation confidence Low

Genome context

chr5: 29557157-29557418 [-]

Mature gma-miR4366-5p

• Accession: MIMAT0054097
• Description: Glycine max gma-miR4366-5p mature miRNA
• Sequence: 31 - CUAGAUAGAAAAAGAAAGGCUCU - 53
• Evidence: experimental ; unknown

Mature gma-miR4366-3p

• Accession: MIMAT0018265
• Description: Glycine max gma-miR4366-3p mature miRNA
• Sequence: 150 - CUACUUAGUAGAGAUUUGUUGG - 171
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14


2. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153