Stem-loop gma-MIR172j

Accession

MI0018671

Description

Glycine max gma-MIR172j precursor miRNA

Literature search

27 open access papers mention gma-MIR172j
(117 sentences)

Sequence

33967 reads, 146.0 reads per million, 176 experiments

gcagguGCAGCAGCAUCAAGAUUCACACacagauuccaccuccuugggggaguguuuaggugcugAGAAUCUUGAUGAUGCUGCAUCagc
((.(((((((((.(((((((((((.((((((.(((((.(((....)))))))).)....))).)).))))))))))).))))))))).))

Structure

  a         G           A  -   ---- g     a   c 
gc gguGCAGCA CAUCAAGAUUC CA Cac    a auucc ccu c
|| ||||||||| ||||||||||| || |||    | ||||| |||  
cg CUACGUCGU GUAGUUCUAAG gu gug    u ugagg ggg u
  a         A           A  c   gauu g     -   u 

Annotation confidence High

Genome context

chr20: 42009499-42009588 [-]

Mature gma-miR172j-5p

• Accession: MIMAT0021660
• Description: Glycine max gma-miR172j-5p mature miRNA
• Sequence: 7 - GCAGCAGCAUCAAGAUUCACAC - 28
• Evidence: experimental ; Illumina [1]

Mature gma-miR172j-3p

• Accession: MIMAT0054252
• Description: Glycine max gma-miR172j-3p mature miRNA
• Sequence: 66 - AGAAUCUUGAUGAUGCUGCAUC - 87
• Evidence: experimental ; unknown

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307