Stem-loop gma-MIR4387c

Accession

MI0016495

Description

Glycine max gma-MIR4387c precursor miRNA

Literature search

1 open access papers mention gma-MIR4387c
(1 sentences)

Sequence

8735 reads, 26.0 reads per million, 161 experiments

cauuaaaugaugaugugacaguuGGAGUGUCACGUCAUCACGccuugugguggacauaucaucaccuuuaaugacguguuagugauuaAGCGUGAUGACGUGACACUCCGUCuaucacgucaucacuuaaug
((((((.(((((((((((.((.(((((((((((((((((((((...(((((((.....)))))))..(((((.((......)).)))))))))))))))))))))))))).)).))))))))))).))))))

Structure

      a           c  u                     cuugugguggacauaucaucaccu     g  gu 
cauuaa ugaugauguga ag uGGAGUGUCACGUCAUCACGc                        uuaau ac  g
|||||| ||||||||||| || |||||||||||||||||||||                        ||||| ||   
guaauu acuacugcacu uC GCCUCACAGUGCAGUAGUGCG                        Aauua ug  u
      c           a  U                     ------------------------     g  au 

Annotation confidence Low

Genome context

chr7: 16521619-16521750 [+]

Mature gma-miR4387c-5p

• Accession: MIMAT0054086
• Description: Glycine max gma-miR4387c-5p mature miRNA
• Sequence: 24 - GGAGUGUCACGUCAUCACG - 42
• Evidence: experimental ; unknown

Mature gma-miR4387c-3p

• Accession: MIMAT0018254
• Description: Glycine max gma-miR4387c-3p mature miRNA
• Sequence: 89 - AGCGUGAUGACGUGACACUCCGUC - 112
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14