Stem-loop gma-MIR172a

Accession

MI0001780

Description

Glycine max gma-MIR172a precursor miRNA

Literature search

33 open access papers mention gma-MIR172a
(169 sentences)

Sequence

66924 reads, 397.0 reads per million, 176 experiments

uuaacagucguuauuugcggauGUAGCAUCAUCAAGAUUCACAugcaagcgcagguggugggugggacuugaugcaaucuaagugcugugccagccaagccauaggucuuuuggaacugAGAAUCUUGAUGAUGCUGCAUCagccauaaacgacuucac
.....(((((((....((.(((((((((((((((((((((.(((.((((.((..(((((((.(((.((.....(((.......))).)).))).))..)))))..))..)))).)..)).))))))))))))))))))))).))....)))))))....

Structure

uuaac       auuu  g                     A  -- g    -c  ag     --  g   g  uugau   au 
     agucguu    gc gauGUAGCAUCAUCAAGAUUC CA  u caag  gc  guggu  gg ugg ac     gca  c
     |||||||    || ||||||||||||||||||||| ||  | ||||  ||  |||||  || ||| ||     |||  u
     ucagcaa    cg CUACGUCGUAGUAGUUCUAAG gu  a guuu  ug  uaccg  cc acc ug     cgu  a
-cacu       auac  a                     A  ca g    uc  ga     aa  g   g  ----u   ga 

Annotation confidence High

Genome context

chr12: 6139598-6139756 [-]

Mature gma-miR172a-5p

• Accession: MIMAT0054008
• Description: Glycine max gma-miR172a-5p mature miRNA
• Sequence: 23 - GUAGCAUCAUCAAGAUUCACA - 43
• Evidence: experimental ; unknown

Mature gma-miR172a-3p

• Accession: MIMAT0001682
• Description: Glycine max gma-miR172a-3p mature miRNA
• Sequence: 120 - AGAAUCUUGAUGAUGCUGCAUC - 141
• Evidence: experimental ; 454 [1], Northern [1]

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160